Variant report

Variant	rs10271000
Chromosome Location	chr7:138277142-138277143
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10236035	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11761566	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11769924	1.00[ASN][1000 genomes]
rs12707387	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12707388	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13231090	1.00[ASN][1000 genomes]
rs13234062	1.00[ASN][1000 genomes]
rs3213902	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33935215	1.00[ASN][1000 genomes]
rs6467777	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6467779	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6467781	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6946420	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6962037	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6970145	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71541397	1.00[ASN][1000 genomes]
rs7782453	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7803989	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7811152	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138272400-138278200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:138272600-138280400	Weak transcription	Thymus	Thymus
3	chr7:138272600-138286200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:138272800-138278400	Weak transcription	Fetal Intestine Large	intestine
5	chr7:138273000-138278600	Weak transcription	Fetal Brain Female	brain
6	chr7:138273000-138284000	Weak transcription	Fetal Kidney	kidney
7	chr7:138273000-138285000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:138273600-138286800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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