Variant report

Variant	rs10271363
Chromosome Location	chr7:147495973-147495974
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10266920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267819	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12530662	0.80[EUR][1000 genomes]
rs12532879	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1404732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6464840	0.94[CHB][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6464841	1.00[YRI][hapmap]
rs7785374	0.94[YRI][hapmap]
rs7785839	0.94[YRI][hapmap]
rs851668	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv889397	chr7:147471710-147585819	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147494600-147506200	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147495000-147496600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:147495200-147496000	Enhancers	Fetal Lung	lung
4	chr7:147495800-147496600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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