Variant report

Variant	rs10271797
Chromosome Location	chr7:104294062-104294063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1465342	0.87[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1468864	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2008042	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2080483	0.85[YRI][hapmap]
rs2193198	1.00[YRI][hapmap]
rs2193199	1.00[YRI][hapmap]
rs2193200	0.85[YRI][hapmap]
rs2385251	1.00[YRI][hapmap]
rs2385254	0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944590	1.00[YRI][hapmap]
rs7784639	1.00[YRI][hapmap]
rs7801079	1.00[YRI][hapmap]
rs7801340	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024532	chr7:104281393-104299847	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104290400-104295000	Enhancers	Colon Smooth Muscle	Colon
2	chr7:104290400-104295600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:104291000-104295600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr7:104292000-104295000	Weak transcription	Brain Germinal Matrix	brain
5	chr7:104292000-104296000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:104293200-104294200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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