Variant report

Variant	rs1027223
Chromosome Location	chr4:100613859-100613860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100599846..100602289-chr4:100612890..100615438,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10516455	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1115721	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722443	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11727560	0.85[AMR][1000 genomes]
rs11729858	0.83[CHB][hapmap]
rs11730739	0.90[ASN][1000 genomes]
rs11936303	0.97[ASN][1000 genomes]
rs12639747	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs12640222	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12642668	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12643245	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12648843	0.94[ASN][1000 genomes]
rs13103880	0.81[ASN][1000 genomes]
rs13111133	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13111603	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13112253	0.89[CHB][hapmap];0.93[CHD][hapmap];0.90[ASN][1000 genomes]
rs13114983	0.83[ASN][1000 genomes]
rs13118288	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13123629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13123690	0.90[ASN][1000 genomes]
rs13124255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13130068	0.97[ASN][1000 genomes]
rs13131135	1.00[CEU][hapmap]
rs13150247	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1352775	0.89[CHB][hapmap];0.97[CHD][hapmap];0.81[JPT][hapmap];0.95[ASN][1000 genomes]
rs1388295	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1426734	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1491234	0.85[JPT][hapmap]
rs1491240	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs1582793	0.88[ASN][1000 genomes]
rs1586756	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1586757	0.99[ASN][1000 genomes]
rs17029269	0.83[ASN][1000 genomes]
rs17029387	0.95[ASN][1000 genomes]
rs17029575	1.00[CEU][hapmap]
rs1816197	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1834659	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1948353	0.97[ASN][1000 genomes]
rs2306986	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs2866167	0.96[ASN][1000 genomes]
rs35215295	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36098323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3792683	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs4699758	1.00[CEU][hapmap]
rs61705069	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs66931934	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6831328	0.97[ASN][1000 genomes]
rs6832692	0.97[ASN][1000 genomes]
rs6840719	0.95[ASN][1000 genomes]
rs6846293	0.83[CHB][hapmap]
rs71614607	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7670607	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[ASN][1000 genomes]
rs7675468	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7677594	0.96[ASN][1000 genomes]
rs7678142	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs7678889	0.93[ASN][1000 genomes]
rs7688255	0.87[ASN][1000 genomes]
rs7691498	0.86[ASN][1000 genomes]
rs884276	1.00[CEU][hapmap];0.87[JPT][hapmap]
rs958868	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100612800-100618000	Weak transcription	Psoas Muscle	Psoas
2	chr4:100613800-100614400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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