Variant report

Variant	rs10273121
Chromosome Location	chr7:104075880-104075881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10224980	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10228106	0.84[LWK][hapmap]
rs10255597	0.87[CEU][hapmap];0.92[YRI][hapmap]
rs10262774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10263003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10273435	0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs11763758	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12705214	0.83[GIH][hapmap];0.91[MEX][hapmap];0.86[AMR][1000 genomes]
rs2385168	0.83[MEX][hapmap]
rs2385169	1.00[CHB][hapmap]
rs4520098	0.82[CHB][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap]
rs4727599	0.81[LWK][hapmap]
rs4730010	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs4730014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs62485084	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62485096	0.96[ASN][1000 genomes]
rs6465985	0.81[LWK][hapmap]
rs6957611	0.81[MEX][hapmap]
rs6977743	0.82[CHB][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap]
rs6979253	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs739508	1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7785837	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888925	chr7:104047599-104170560	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10273121	COG5	cis	cerebellum	SCAN
rs10273121	MEPCE	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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