Variant report

Variant	rs10273549
Chromosome Location	chr7:112152119-112152120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10226760	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10256618	1.00[ASN][1000 genomes]
rs10279583	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981674	1.00[ASN][1000 genomes]
rs3128431	1.00[ASN][1000 genomes]
rs6955444	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6970165	1.00[ASN][1000 genomes]
rs73424473	1.00[ASN][1000 genomes]
rs740358	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787583	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112150800-112152800	Weak transcription	Right Atrium	heart
2	chr7:112151200-112153400	Enhancers	Fetal Brain Female	brain
3	chr7:112151600-112152200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr7:112151600-112152400	Enhancers	Brain Cingulate Gyrus	brain
5	chr7:112151600-112153800	Enhancers	Fetal Muscle Leg	muscle
6	chr7:112151800-112152200	Enhancers	Brain Germinal Matrix	brain
7	chr7:112151800-112152200	Enhancers	Fetal Muscle Trunk	muscle
8	chr7:112151800-112154600	Enhancers	Fetal Brain Male	brain
9	chr7:112152000-112152200	ZNF genes & repeats	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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