Variant report

Variant	rs10274240
Chromosome Location	chr7:104523180-104523181
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104523003..104525584-chr7:105230453..105233041,2	K562	blood:
2	chr7:104523014..104525633-chr7:104652582..104654103,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185055	Chromatin interaction
ENSG00000228393	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10216243	1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs10226456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10226802	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10227564	0.81[ASN][1000 genomes]
rs10235696	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10236552	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10237433	0.89[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10238498	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10243336	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10243529	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10247246	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10247944	0.82[ASN][1000 genomes]
rs10250365	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10253341	0.88[CHB][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs10257360	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10259925	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10262655	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10264318	0.81[ASN][1000 genomes]
rs10266362	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10272668	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10273609	1.00[ASN][1000 genomes]
rs10280365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10281485	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10953454	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10953455	0.92[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10953457	0.83[ASN][1000 genomes]
rs12534673	0.81[ASN][1000 genomes]
rs12535201	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12537945	0.87[ASN][1000 genomes]
rs12670275	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12672211	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12705281	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12705282	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12705285	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13225632	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13228977	0.83[ASN][1000 genomes]
rs1468813	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17777379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs17777439	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2285533	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28478615	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28546781	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28587189	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34083033	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34171467	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34439336	0.85[EUR][1000 genomes]
rs34508498	0.81[ASN][1000 genomes]
rs35146170	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs35324592	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35337480	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35756879	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35894637	0.94[ASN][1000 genomes]
rs35988800	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4351347	0.82[ASN][1000 genomes]
rs6949139	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6963979	1.00[CHB][hapmap]
rs6968540	0.93[ASN][1000 genomes]
rs71562620	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7779117	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7781864	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104509800-104524400	Weak transcription	Pancreas	Pancrea
2	chr7:104512000-104524000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:104519800-104524000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr7:104521600-104523400	Weak transcription	Fetal Intestine Small	intestine
5	chr7:104521600-104523600	Weak transcription	Fetal Intestine Large	intestine
6	chr7:104521600-104523800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:104523000-104524000	Enhancers	Fetal Heart	heart

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