Variant report

Variant	rs10274356
Chromosome Location	chr7:138140862-138140863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:138138897..138141334-chr7:138143865..138146317,4	K562	blood:
2	chr7:138135634..138137493-chr7:138139366..138141323,2	K562	blood:
3	chr7:138139164..138142124-chr7:138144665..138146895,3	K562	blood:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12669629	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13229601	0.85[ASN][1000 genomes]
rs2029814	0.86[EUR][1000 genomes]
rs2029815	0.87[EUR][1000 genomes]
rs34415266	0.97[ASN][1000 genomes]
rs3757383	0.89[ASN][1000 genomes]
rs56355389	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58995934	0.86[EUR][1000 genomes]
rs59168504	0.87[EUR][1000 genomes]
rs62487589	0.86[EUR][1000 genomes]
rs62487590	0.86[EUR][1000 genomes]
rs62487591	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62487592	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62487593	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62487601	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62487602	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62487603	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62487607	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62487608	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62487612	0.85[EUR][1000 genomes]
rs6467773	0.97[ASN][1000 genomes]
rs73164620	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73164621	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs752158	0.80[ASN][1000 genomes]
rs7786347	0.97[ASN][1000 genomes]
rs7798391	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138138400-138142400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:138140000-138141200	Enhancers	Liver	Liver
3	chr7:138140000-138141400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:138140000-138141400	Enhancers	HepG2	liver
5	chr7:138140200-138141000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:138140200-138141000	Enhancers	Fetal Intestine Small	intestine
7	chr7:138140200-138141200	Enhancers	H9 Cell Line	embryonic stem cell
8	chr7:138140200-138141400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:138140400-138141000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:138140400-138141200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:138140600-138142200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:138140600-138142400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:138140600-138142600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:138140600-138142600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr7:138140600-138142600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:138140600-138142600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:138140600-138144200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:138140600-138144200	Weak transcription	Fetal Intestine Large	intestine
19	chr7:138140800-138143200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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