Variant report
| Variant | rs10275020 |
|---|---|
| Chromosome Location | chr7:126374006-126374007 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126368803..126371577-chr7:126373352..126375062,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1008906 | 0.91[CHB][hapmap];0.85[JPT][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10275004 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10487452 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs11764888 | 0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11765912 | 0.91[CHB][hapmap];0.85[JPT][hapmap];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11770188 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs11773107 | 0.81[CHB][hapmap] |
| rs1345211 | 1.00[CHB][hapmap] |
| rs1468157 | 0.91[CHB][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17149953 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs17150011 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs17150014 | 1.00[JPT][hapmap] |
| rs17610771 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs2299495 | 0.91[CHB][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs41463444 | 0.81[CHB][hapmap];0.85[JPT][hapmap] |
| rs4731326 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs62477942 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62477944 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs62477945 | 0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62477947 | 0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6953879 | 1.00[CHB][hapmap];0.85[JPT][hapmap] |
| rs7805288 | 0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7805959 | 0.81[CHB][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9690442 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529300 | chr7:125669493-126587858 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032938 | chr7:126067684-126587859 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv539119 | chr7:126067684-126587859 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv889187 | chr7:126219766-126478190 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
