Variant report

Variant	rs10276142
Chromosome Location	chr7:137856346-137856347
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:31)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:31 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr7:137856241-137856449	K562	blood:	n/a	n/a
2	REST	chr7:137856225-137856428	HepG2	liver:	n/a	n/a
3	REST	chr7:137856122-137856407	K562	blood:	n/a	n/a
4	RUNX3	chr7:137855928-137856436	GM12878	blood:	n/a	n/a
5	NFIC	chr7:137855999-137856379	GM12878	blood:	n/a	n/a
6	REST	chr7:137856221-137856399	MCF-7	breast:	n/a	n/a
7	YY1	chr7:137856063-137856390	GM12878	blood:	n/a	n/a
8	RUNX3	chr7:137855990-137856461	GM12878	blood:	n/a	n/a
9	REST	chr7:137856094-137856616	GM12878	blood:	n/a	n/a
10	IKZF1	chr7:137856026-137856378	GM12878	blood:	n/a	n/a
11	FOXA1	chr7:137856207-137856448	T-47D	breast:	n/a	n/a
12	YY1	chr7:137856032-137856393	GM12878	blood:	n/a	n/a
13	REST	chr7:137856138-137856382	H1-hESC	embryonic stem cell:	n/a	n/a
14	MTA3	chr7:137855929-137856406	GM12878	blood:	n/a	n/a
15	REST	chr7:137856117-137856487	PFSK-1	brain:	n/a	n/a
16	REST	chr7:137856161-137856387	HCT-116	colon:	n/a	n/a
17	REST	chr7:137856229-137856386	GM12878	blood:	n/a	n/a
18	REST	chr7:137856131-137856433	PANC-1	pancreas:	n/a	n/a
19	REST	chr7:137856235-137856402	HL-60	blood:	n/a	n/a
20	REST	chr7:137856164-137856442	PANC-1	pancreas:	n/a	n/a
21	REST	chr7:137856107-137856427	HL-60	blood:	n/a	n/a
22	REST	chr7:137856157-137856432	ECC-1	luminal epithelium:	n/a	n/a
23	REST	chr7:137856248-137856358	K562	blood:	n/a	n/a
24	REST	chr7:137856139-137856447	MCF-7	breast:	n/a	n/a
25	REST	chr7:137856174-137856509	PFSK-1	brain:	n/a	n/a
26	REST	chr7:137856256-137856366	PANC-1	pancreas:	n/a	n/a
27	MEF2A	chr7:137855959-137856387	GM12878	blood:	n/a	n/a
28	REST	chr7:137856253-137856408	GM12878	blood:	n/a	n/a
29	REST	chr7:137856191-137856412	H1-hESC	embryonic stem cell:	n/a	n/a
30	NFATC1	chr7:137856035-137856414	GM12878	blood:	n/a	n/a
31	REST	chr7:137856243-137856387	Hela-S3	cervix:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000252820	TF binding region
ENSG00000238984	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10232506	1.00[AMR][1000 genomes]
rs10235317	1.00[AMR][1000 genomes]
rs10236609	1.00[AMR][1000 genomes]
rs10242671	1.00[AMR][1000 genomes]
rs10249301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250005	1.00[AMR][1000 genomes]
rs10258577	1.00[AMR][1000 genomes]
rs10264216	1.00[AMR][1000 genomes]
rs10266425	1.00[AMR][1000 genomes]
rs10266565	1.00[AMR][1000 genomes]
rs10268709	1.00[AMR][1000 genomes]
rs10279427	1.00[AMR][1000 genomes]
rs10281914	1.00[AMR][1000 genomes]
rs13362852	1.00[AMR][1000 genomes]
rs28650966	1.00[AMR][1000 genomes]
rs28675865	1.00[AMR][1000 genomes]
rs28687061	1.00[AMR][1000 genomes]
rs28691233	1.00[AMR][1000 genomes]
rs28735498	1.00[AMR][1000 genomes]
rs28841352	1.00[AMR][1000 genomes]
rs73732228	1.00[AMR][1000 genomes]
rs73732229	1.00[AMR][1000 genomes]
rs7810602	1.00[AMR][1000 genomes]
rs9656503	1.00[AMR][1000 genomes]
rs9692029	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831151	chr7:137711447-137865471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137851600-137856400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:137851800-137856400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:137852000-137856400	Enhancers	HepG2	liver
4	chr7:137852200-137856400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:137852400-137857000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:137852600-137856400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:137853000-137856400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:137854000-137856400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:137855000-137856400	Enhancers	Liver	Liver
10	chr7:137855000-137857800	Weak transcription	Primary T cells from cord blood	blood
11	chr7:137855200-137856400	Enhancers	Fetal Thymus	thymus
12	chr7:137855200-137857800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:137855400-137856400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr7:137855400-137856400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:137855600-137856400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:137855600-137856400	Enhancers	Thymus	Thymus
17	chr7:137855600-137857000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr7:137855800-137856400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr7:137855800-137856400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:137855800-137856400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:137855800-137856400	Flanking Active TSS	GM12878-XiMat	blood
22	chr7:137855800-137856400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr7:137855800-137857200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr7:137856000-137856600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:137856000-137857200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr7:137856200-137856400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:137856200-137856400	Enhancers	Dnd41	blood

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