Variant report

Variant	rs10276653
Chromosome Location	chr7:104558814-104558815
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10231439	0.93[ASN][1000 genomes]
rs10245078	0.88[ASN][1000 genomes]
rs10953459	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11978074	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12333765	0.87[ASN][1000 genomes]
rs2428161	0.91[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs59869531	0.89[ASN][1000 genomes]
rs62485458	0.83[EUR][1000 genomes]
rs6949656	0.89[ASN][1000 genomes]
rs740068	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs7795893	0.88[ASW][hapmap];0.81[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs886145	0.91[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10276653	DNAJB9	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104552600-104563400	Weak transcription	Pancreas	Pancrea
2	chr7:104554600-104562800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:104555200-104563400	Weak transcription	Brain Substantia Nigra	brain
4	chr7:104555200-104563600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:104556000-104562600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:104558000-104559000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:104558200-104559200	Genic enhancers	Fetal Kidney	kidney
8	chr7:104558400-104571600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:104558600-104559000	Enhancers	Fetal Intestine Large	intestine
10	chr7:104558600-104559200	Enhancers	GM12878-XiMat	blood
11	chr7:104558800-104559200	Genic enhancers	Fetal Intestine Small	intestine
12	chr7:104558800-104561800	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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