Variant report
| Variant | rs10279265 |
|---|---|
| Chromosome Location | chr7:137772083-137772084 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:137769402..137771015-chr7:137771922..137774982,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RN7SKP223 | TF binding region |
| AKR1D1 | TF binding region |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10227099 | 1.00[AMR][1000 genomes] |
| rs10229164 | 1.00[AMR][1000 genomes] |
| rs10230284 | 1.00[AMR][1000 genomes] |
| rs10230440 | 1.00[AMR][1000 genomes] |
| rs10231078 | 1.00[AMR][1000 genomes] |
| rs10236488 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10258807 | 1.00[AMR][1000 genomes] |
| rs10260689 | 1.00[AMR][1000 genomes] |
| rs10263802 | 1.00[AMR][1000 genomes] |
| rs10264483 | 1.00[AMR][1000 genomes] |
| rs10276854 | 1.00[AMR][1000 genomes] |
| rs10276951 | 1.00[AMR][1000 genomes] |
| rs17169511 | 1.00[AMR][1000 genomes] |
| rs28547527 | 1.00[AMR][1000 genomes] |
| rs28587485 | 1.00[AMR][1000 genomes] |
| rs7799130 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv518070 | chr7:137534627-137808839 | Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv831151 | chr7:137711447-137865471 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 4 | nsv437032 | chr7:137753091-137773291 | Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:137770400-137772400 | Enhancers | HepG2 | liver |
| 2 | chr7:137771400-137772200 | Flanking Active TSS | Liver | Liver |
