Variant report

Variant	rs10279375
Chromosome Location	chr7:104319876-104319877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10233987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10244859	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10279337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279339	0.95[AFR][1000 genomes]
rs10464615	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11767604	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.87[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap]
rs11767619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12531723	0.86[CHB][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap]
rs12536801	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12705261	0.86[CHB][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap]
rs12705263	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs12705264	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs13241253	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs13242612	0.86[CHB][hapmap]
rs4255068	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4419737	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs4512324	0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4566971	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs4624947	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4730037	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6944469	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6945225	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs6955455	0.87[CHB][hapmap]
rs6962309	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs9648932	0.91[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.83[TSI][hapmap]
rs9885990	0.90[CHB][hapmap]
rs9886292	0.86[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv967437	chr7:104312412-104323208	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv429790	chr7:104314049-104488049	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10279375	BCAP29	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104319600-104320800	Enhancers	K562	blood

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