Variant report

Variant	rs10279557
Chromosome Location	chr7:147694849-147694850
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10224783	0.89[YRI][hapmap]
rs10226093	1.00[EUR][1000 genomes]
rs10227836	0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10236799	1.00[EUR][1000 genomes]
rs10241081	1.00[EUR][1000 genomes]
rs10243164	0.88[YRI][hapmap]
rs10250801	1.00[EUR][1000 genomes]
rs10253762	0.88[YRI][hapmap]
rs10256166	0.88[YRI][hapmap]
rs10257780	0.90[EUR][1000 genomes]
rs10261595	0.84[YRI][hapmap];0.87[AFR][1000 genomes]
rs10261693	0.82[YRI][hapmap];0.87[AFR][1000 genomes]
rs10269138	0.91[YRI][hapmap]
rs10269250	0.90[YRI][hapmap]
rs10269257	0.92[YRI][hapmap]
rs10270437	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10270778	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10273095	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10273493	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10276268	0.82[EUR][1000 genomes]
rs10276274	0.90[EUR][1000 genomes]
rs10276996	0.84[YRI][hapmap];0.87[AFR][1000 genomes]
rs11972972	0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11974390	0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11976838	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979926	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12536614	0.88[YRI][hapmap]
rs12539425	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs17170767	0.85[YRI][hapmap]
rs2373286	0.91[YRI][hapmap]
rs2373289	0.84[YRI][hapmap]
rs28373395	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs28377968	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs28394241	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs28554472	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs28594409	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs28693625	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs34024797	0.90[AFR][1000 genomes]
rs4726905	0.80[YRI][hapmap]
rs4726907	0.81[YRI][hapmap]
rs57055307	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58083908	1.00[EUR][1000 genomes]
rs58092267	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58526779	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58848818	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60119393	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60692572	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970931	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs719311	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs73464297	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73466110	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs73466115	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73466190	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73466195	1.00[EUR][1000 genomes]
rs73468119	1.00[EUR][1000 genomes]
rs73468120	1.00[EUR][1000 genomes]
rs7780623	0.88[AFR][1000 genomes]
rs7789579	0.89[YRI][hapmap]
rs7805706	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147687200-147696000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:147694800-147695000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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