Variant report

Variant	rs10279583
Chromosome Location	chr7:112149333-112149334
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10226760	1.00[ASN][1000 genomes]
rs10256618	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10273549	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981674	1.00[ASN][1000 genomes]
rs3128431	1.00[ASN][1000 genomes]
rs6955444	1.00[ASN][1000 genomes]
rs6970165	1.00[ASN][1000 genomes]
rs73424473	1.00[ASN][1000 genomes]
rs740358	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787583	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112144400-112150000	Weak transcription	Right Ventricle	heart
2	chr7:112146000-112150000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:112146400-112150400	Weak transcription	Right Atrium	heart
4	chr7:112148800-112150800	Enhancers	Fetal Muscle Trunk	muscle
5	chr7:112149000-112150000	Enhancers	HSMMtube	muscle
6	chr7:112149000-112150800	Enhancers	Fetal Muscle Leg	muscle
7	chr7:112149000-112151200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:112149200-112149600	Enhancers	Osteobl	bone
9	chr7:112149200-112149800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:112149200-112150000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:112149200-112150200	Enhancers	NHDF-Ad	bronchial
12	chr7:112149200-112150800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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