Variant report

Variant	rs10279616
Chromosome Location	chr7:126324176-126324177
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1008905	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10224336	0.88[LWK][hapmap];0.92[MKK][hapmap];0.93[AFR][1000 genomes]
rs1024417	0.93[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.90[ASN][1000 genomes]
rs1024418	0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11760596	0.85[CHB][hapmap]
rs12538632	0.85[CHB][hapmap]
rs12667118	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12706739	0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[TSI][hapmap]
rs13234319	0.82[CHB][hapmap]
rs13241983	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs13243112	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1419482	0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[TSI][hapmap]
rs1419483	0.82[CHB][hapmap]
rs1579214	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1815973	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237761	0.80[CHD][hapmap]
rs2237764	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237765	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2283068	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2283069	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2283073	0.81[JPT][hapmap]
rs2299460	0.85[CHB][hapmap]
rs2299492	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299493	0.80[CHD][hapmap]
rs2299497	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs2299498	0.93[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.90[ASN][1000 genomes]
rs2402820	0.80[CHD][hapmap]
rs2896374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34261190	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35009695	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3808153	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3824011	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4728048	0.93[AFR][1000 genomes]
rs4728051	0.93[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.90[ASN][1000 genomes]
rs4731317	0.85[CHB][hapmap]
rs4731321	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60676251	0.92[AFR][1000 genomes]
rs61347840	0.94[AFR][1000 genomes]
rs6960925	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126321800-126325000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:126321800-126328800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr7:126323200-126324400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:126323600-126328600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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