Variant report

Variant	rs10280155
Chromosome Location	chr7:147455695-147455696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11765619	0.85[EUR][1000 genomes]
rs1467331	0.95[ASN][1000 genomes]
rs2140812	0.97[ASN][1000 genomes]
rs34645698	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58676850	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73475064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73475065	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785603	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7800200	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs851651	0.89[EUR][1000 genomes]
rs851652	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147453800-147458600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147453800-147460600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:147454200-147456400	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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