Variant report

Variant	rs10280229
Chromosome Location	chr7:137255317-137255318
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10081252	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10226880	1.00[CEU][hapmap]
rs10226970	1.00[ASN][1000 genomes]
rs10229086	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10232182	1.00[ASN][1000 genomes]
rs10233537	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10234462	1.00[ASN][1000 genomes]
rs10237704	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10238276	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10238305	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10242081	1.00[ASN][1000 genomes]
rs10242488	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10242747	1.00[ASN][1000 genomes]
rs10245413	1.00[JPT][hapmap]
rs10246829	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10246952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10252668	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10255388	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10255937	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10260958	1.00[ASN][1000 genomes]
rs10261618	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10264172	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10264413	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10267688	0.94[ASN][1000 genomes]
rs10268521	1.00[ASN][1000 genomes]
rs10270097	1.00[CEU][hapmap]
rs10271043	1.00[JPT][hapmap]
rs10273321	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10274702	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10277872	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10279489	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10281244	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1627230	1.00[CEU][hapmap]
rs1632142	0.85[CEU][hapmap]
rs1646403	0.83[EUR][1000 genomes]
rs17169237	1.00[JPT][hapmap]
rs17169273	1.00[CEU][hapmap]
rs17169278	1.00[CEU][hapmap]
rs17169284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17169298	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17169313	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17169324	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1728450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1728453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28451058	0.82[ASN][1000 genomes]
rs28521198	1.00[ASN][1000 genomes]
rs28572056	1.00[ASN][1000 genomes]
rs28736349	1.00[ASN][1000 genomes]
rs28755996	1.00[ASN][1000 genomes]
rs28758372	1.00[ASN][1000 genomes]
rs3800605	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3800609	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3800610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3800611	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3823545	1.00[ASN][1000 genomes]
rs3823547	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs57226761	0.94[ASN][1000 genomes]
rs58048755	1.00[ASN][1000 genomes]
rs59024585	1.00[ASN][1000 genomes]
rs6467709	0.85[CEU][hapmap]
rs6945142	1.00[ASN][1000 genomes]
rs6945473	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6949210	0.82[ASN][1000 genomes]
rs6949568	0.82[ASN][1000 genomes]
rs6969227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6969358	0.82[ASN][1000 genomes]
rs697596	1.00[JPT][hapmap]
rs706560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs706561	1.00[JPT][hapmap]
rs706562	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs706567	1.00[JPT][hapmap]
rs706568	1.00[JPT][hapmap]
rs73449424	1.00[ASN][1000 genomes]
rs73449434	1.00[ASN][1000 genomes]
rs73449444	1.00[ASN][1000 genomes]
rs73451467	1.00[ASN][1000 genomes]
rs73453511	1.00[ASN][1000 genomes]
rs73728732	0.94[ASN][1000 genomes]
rs7781327	1.00[JPT][hapmap]
rs7784757	1.00[CEU][hapmap]
rs7800321	1.00[JPT][hapmap]
rs834059	1.00[CEU][hapmap]
rs834060	0.85[CEU][hapmap]
rs834063	0.82[CEU][hapmap]
rs834067	0.85[CEU][hapmap]
rs834069	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs834075	0.85[CEU][hapmap]
rs834088	0.85[CEU][hapmap]
rs834095	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs834099	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs834100	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs834431	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs834432	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs834433	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs834435	0.87[EUR][1000 genomes]
rs834436	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs834438	0.82[ASN][1000 genomes]
rs834439	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs834443	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs834444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs834445	0.87[EUR][1000 genomes]
rs834446	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs834447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs863082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs864434	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1022793	chr7:137187383-137619359	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137215400-137275400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:137224400-137274800	Weak transcription	HSMMtube	muscle
3	chr7:137224800-137262400	Weak transcription	HSMM	muscle
4	chr7:137237200-137264000	Weak transcription	NH-A	brain
5	chr7:137237400-137277800	Weak transcription	Aorta	Aorta
6	chr7:137249400-137256800	Weak transcription	Osteobl	bone
7	chr7:137249400-137262800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:137249800-137265000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:137250400-137256200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:137250400-137256800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:137251000-137264600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:137252800-137256000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:137253000-137256200	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr7:137253400-137261600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:137254000-137256200	Weak transcription	Brain Germinal Matrix	brain
16	chr7:137255000-137274800	Weak transcription	Brain Anterior Caudate	brain

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