Variant report

Variant	rs10280365
Chromosome Location	chr7:104529397-104529398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104523347..104526293-chr7:104526937..104529454,4	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10216243	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.84[ASN][1000 genomes]
rs10226456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10226802	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10227564	0.80[ASN][1000 genomes]
rs10235696	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10236552	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10237433	0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10238498	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10243336	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10243529	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10247246	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10247369	0.80[JPT][hapmap]
rs10247944	0.81[ASN][1000 genomes]
rs10250365	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10253341	0.85[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs10257360	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10259925	0.95[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10262655	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10264318	0.80[ASN][1000 genomes]
rs10266362	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10272668	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10273609	0.99[ASN][1000 genomes]
rs10274240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10281485	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10953454	0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10953455	0.93[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10953457	0.83[ASN][1000 genomes]
rs12534673	0.81[ASN][1000 genomes]
rs12535201	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12537945	0.87[ASN][1000 genomes]
rs12670275	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12672211	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12705281	0.95[CHB][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12705282	0.85[EUR][1000 genomes]
rs12705285	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13225632	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13228977	0.83[ASN][1000 genomes]
rs13233998	0.89[MEX][hapmap];1.00[TSI][hapmap]
rs1468813	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs17777379	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes]
rs17777439	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2285533	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28478615	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28546781	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28587189	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34083033	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34171467	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34439336	0.85[EUR][1000 genomes]
rs34508498	0.80[ASN][1000 genomes]
rs35146170	0.95[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs35324592	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35337480	0.85[EUR][1000 genomes]
rs35756879	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35894637	0.94[ASN][1000 genomes]
rs35988800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4351347	0.81[ASN][1000 genomes]
rs6949139	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6963979	0.95[CHB][hapmap]
rs6968540	0.92[ASN][1000 genomes]
rs71562620	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs71562621	0.80[AMR][1000 genomes]
rs7779117	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7781864	0.95[CHB][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv981792	chr7:104524351-104538104	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104524200-104531800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:104524600-104531800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:104524600-104532200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:104524800-104530600	Weak transcription	Right Atrium	heart
5	chr7:104524800-104534600	Weak transcription	Fetal Kidney	kidney
6	chr7:104524800-104535200	Weak transcription	Colonic Mucosa	Colon
7	chr7:104524800-104540800	Weak transcription	Brain Anterior Caudate	brain
8	chr7:104525000-104531200	Weak transcription	Pancreas	Pancrea
9	chr7:104525400-104534600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:104525400-104540400	Weak transcription	Brain Substantia Nigra	brain
11	chr7:104525600-104534400	Strong transcription	Fetal Intestine Small	intestine
12	chr7:104525800-104530000	Weak transcription	GM12878-XiMat	blood
13	chr7:104527400-104529600	Strong transcription	Fetal Intestine Large	intestine
14	chr7:104527800-104539600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:104528200-104530800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:104529200-104530800	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links