Variant report

Variant	rs10280638
Chromosome Location	chr7:112366382-112366383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112365924..112367819-chr7:112368351..112371241,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10215501	0.97[ASN][1000 genomes]
rs10216223	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10216230	0.97[ASN][1000 genomes]
rs10228483	0.82[ASN][1000 genomes]
rs10234058	0.97[ASN][1000 genomes]
rs10238492	0.82[CHB][hapmap]
rs10242871	0.91[ASN][1000 genomes]
rs10247759	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10249701	0.85[EUR][1000 genomes]
rs10253054	0.91[ASN][1000 genomes]
rs10261844	0.85[ASN][1000 genomes]
rs10265582	0.94[ASN][1000 genomes]
rs10271752	0.83[EUR][1000 genomes]
rs10273060	0.94[ASN][1000 genomes]
rs10273589	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10275208	0.82[CHB][hapmap]
rs10280916	0.88[ASN][1000 genomes]
rs1227158	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1227163	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs1227168	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1227171	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1227172	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1227174	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1227176	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1227177	0.86[EUR][1000 genomes]
rs1227178	0.86[EUR][1000 genomes]
rs1227181	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes]
rs1227183	0.82[EUR][1000 genomes]
rs1227190	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1238698	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1530756	0.82[CHB][hapmap]
rs1547554	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1614000	0.94[ASN][1000 genomes]
rs1615468	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1718944	0.82[JPT][hapmap]
rs1718955	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1718957	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1718967	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1718969	0.85[EUR][1000 genomes]
rs1796491	0.82[CHB][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1796492	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1796493	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1796516	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1922907	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1996843	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2028028	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2396570	0.82[CHB][hapmap]
rs2396574	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2457	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2687267	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2708296	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2905274	0.86[ASN][1000 genomes]
rs3957315	0.82[CHB][hapmap]
rs3997335	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs4490768	0.94[ASN][1000 genomes]
rs494324	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs548994	0.89[CEU][hapmap]
rs549688	0.85[CEU][hapmap]
rs552304	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs56113805	0.91[ASN][1000 genomes]
rs56376790	0.85[ASN][1000 genomes]
rs564494	0.90[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6466419	1.00[ASN][1000 genomes]
rs6466421	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs672911	0.82[JPT][hapmap]
rs685259	0.90[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6944843	0.82[CHB][hapmap]
rs6945635	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6946335	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6950318	0.88[ASN][1000 genomes]
rs6953522	0.90[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs6955834	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6970266	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs726593	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7777973	0.81[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs7778135	0.85[EUR][1000 genomes]
rs7780098	0.85[ASN][1000 genomes]
rs7781871	0.82[CHB][hapmap]
rs7789772	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7803405	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]
rs7806781	1.00[CHB][hapmap]
rs7808616	0.82[CHB][hapmap]
rs821783	0.90[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs821785	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs821787	0.95[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs9649356	0.86[EUR][1000 genomes]
rs9655816	0.86[EUR][1000 genomes]
rs9969347	0.90[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112364600-112388400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:112366000-112366600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:112366200-112366400	Flanking Active TSS	Pancreas	Pancrea
4	chr7:112366200-112366600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:112366200-112366600	Enhancers	K562	blood

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