Variant report

Variant	rs10281709
Chromosome Location	chr7:103776611-103776612
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103769811..103772030-chr7:103775156..103777907,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10155973	0.81[AFR][1000 genomes]
rs1019312	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10234499	1.00[EUR][1000 genomes]
rs10235130	1.00[EUR][1000 genomes]
rs10235201	0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10241191	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242752	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249033	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250235	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251308	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10251561	1.00[EUR][1000 genomes]
rs10251976	0.84[AFR][1000 genomes]
rs10255806	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10256764	1.00[EUR][1000 genomes]
rs10258773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10260238	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10262560	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262796	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10262996	0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10263828	1.00[EUR][1000 genomes]
rs10266337	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267412	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267940	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10270562	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10271923	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10275484	1.00[EUR][1000 genomes]
rs10275705	0.81[AFR][1000 genomes]
rs10276243	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10277637	0.86[YRI][hapmap]
rs10278320	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10279736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10282300	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487184	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487192	0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11489610	0.95[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11972422	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979390	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11979993	0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11980018	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12112576	1.00[EUR][1000 genomes]
rs16873387	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158586	1.00[EUR][1000 genomes]
rs17159290	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17159774	1.00[EUR][1000 genomes]
rs2307409	1.00[EUR][1000 genomes]
rs2385134	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481813	1.00[EUR][1000 genomes]
rs28644319	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28645598	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28686914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28702500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28773535	1.00[EUR][1000 genomes]
rs28820003	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs3779515	0.87[YRI][hapmap]
rs3779516	0.87[YRI][hapmap]
rs58842751	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59750244	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6948021	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6949887	0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs6954109	1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962621	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6967711	1.00[EUR][1000 genomes]
rs6975642	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413894	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415704	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415717	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73415730	1.00[EUR][1000 genomes]
rs73415786	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415801	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73417705	1.00[EUR][1000 genomes]
rs73417718	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777446	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7777906	0.95[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810496	1.00[EUR][1000 genomes]
rs9655777	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656090	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103761400-103778600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:103763000-103777600	Weak transcription	Fetal Intestine Small	intestine
3	chr7:103763400-103779400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:103763800-103815000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:103764000-103783200	Weak transcription	NHLF	lung
6	chr7:103764000-103829800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:103764400-103777800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:103764400-103778400	Weak transcription	NHDF-Ad	bronchial
9	chr7:103764400-103820200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:103765400-103778000	Weak transcription	Stomach Mucosa	stomach
11	chr7:103765600-103815000	Weak transcription	Brain Angular Gyrus	brain
12	chr7:103765600-103840200	Weak transcription	Small Intestine	intestine
13	chr7:103766000-103778000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:103766200-103779000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:103766200-103779000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:103766200-103800000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:103766200-103803800	Weak transcription	Pancreas	Pancrea
18	chr7:103766200-103816000	Weak transcription	Brain Substantia Nigra	brain
19	chr7:103766200-103823600	Weak transcription	Esophagus	oesophagus
20	chr7:103766200-103838400	Weak transcription	Spleen	Spleen
21	chr7:103766400-103822600	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:103767200-103776800	Weak transcription	Brain Anterior Caudate	brain
23	chr7:103767200-103779000	Weak transcription	Fetal Brain Male	brain
24	chr7:103767200-103829200	Weak transcription	Gastric	stomach
25	chr7:103767200-103843600	Weak transcription	Right Ventricle	heart
26	chr7:103767400-103778400	Weak transcription	Psoas Muscle	Psoas
27	chr7:103767600-103779000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:103767600-103820200	Weak transcription	Brain Germinal Matrix	brain
29	chr7:103768000-103779800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:103769000-103776800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:103769200-103778800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:103769200-103822600	Weak transcription	Fetal Kidney	kidney
33	chr7:103769400-103777000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:103769400-103778000	Strong transcription	Liver	Liver
35	chr7:103769400-103778200	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr7:103769400-103778400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:103769400-103778600	Strong transcription	Primary B cells from peripheral blood	blood
38	chr7:103769400-103778600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:103769400-103779800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr7:103769600-103777200	Strong transcription	Stomach Smooth Muscle	stomach
41	chr7:103769600-103778200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:103769800-103777000	Strong transcription	K562	blood
43	chr7:103770000-103778200	Strong transcription	Adipose Nuclei	Adipose
44	chr7:103770000-103778400	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr7:103770000-103778800	Strong transcription	Primary T cells from cord blood	blood
46	chr7:103770200-103777400	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr7:103770400-103777600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr7:103770600-103777400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:103770600-103777800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:103770600-103778200	Strong transcription	Monocytes-CD14+_RO01746	blood

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