Variant report

Variant	rs10281965
Chromosome Location	chr7:147464514-147464515
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10215118	0.83[AMR][1000 genomes]
rs10215975	0.83[AMR][1000 genomes]
rs10216137	0.83[AMR][1000 genomes]
rs10281915	0.83[AMR][1000 genomes]
rs28497948	0.83[AMR][1000 genomes]
rs73472882	0.83[AMR][1000 genomes]
rs9655719	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933973	chr7:147438206-147549993	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147461200-147464600	Weak transcription	Brain Hippocampus Middle	brain
2	chr7:147461200-147469600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:147461200-147472800	Weak transcription	Brain Angular Gyrus	brain
4	chr7:147461600-147466600	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links