Variant report

Variant	rs1028538
Chromosome Location	chr14:33177756-33177757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2300830	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3784209	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs58036433	1.00[EUR][1000 genomes]
rs61693948	1.00[EUR][1000 genomes]
rs7140269	0.86[ASN][1000 genomes]
rs927061	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33172200-33179600	Weak transcription	Colonic Mucosa	Colon
2	chr14:33172600-33177800	Weak transcription	HSMMtube	muscle
3	chr14:33172600-33178000	Weak transcription	Left Ventricle	heart
4	chr14:33172600-33178000	Weak transcription	Right Ventricle	heart
5	chr14:33172600-33178000	Weak transcription	HMEC	breast
6	chr14:33172600-33191600	Weak transcription	Psoas Muscle	Psoas
7	chr14:33172800-33177800	Weak transcription	NH-A	brain
8	chr14:33172800-33177800	Weak transcription	Osteobl	bone
9	chr14:33172800-33178000	Weak transcription	Fetal Brain Male	brain
10	chr14:33172800-33178000	Weak transcription	HSMM	muscle
11	chr14:33173000-33178000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr14:33173000-33178000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:33173000-33178000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr14:33173000-33178000	Weak transcription	Ovary	ovary
15	chr14:33173000-33179600	Weak transcription	Right Atrium	heart
16	chr14:33173000-33180200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:33173200-33177800	Weak transcription	Fetal Lung	lung
18	chr14:33173200-33178000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:33173200-33178400	Weak transcription	Fetal Brain Female	brain
20	chr14:33173200-33194800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:33173400-33177800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:33173400-33177800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:33173400-33177800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:33176000-33178200	Weak transcription	Aorta	Aorta
25	chr14:33176400-33178000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr14:33176800-33178000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:33176800-33178000	Enhancers	NHDF-Ad	bronchial
28	chr14:33177000-33181200	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr14:33177000-33181400	Enhancers	Fetal Heart	heart
30	chr14:33177200-33178800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr14:33177200-33179000	Enhancers	Colon Smooth Muscle	Colon
32	chr14:33177200-33179000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr14:33177200-33179400	Enhancers	Brain Anterior Caudate	brain
34	chr14:33177200-33179600	Enhancers	Brain Hippocampus Middle	brain
35	chr14:33177200-33179600	Enhancers	Brain Substantia Nigra	brain
36	chr14:33177200-33179800	Enhancers	Rectal Smooth Muscle	rectum
37	chr14:33177200-33180600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr14:33177400-33178200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:33177400-33178600	Enhancers	Fetal Muscle Leg	muscle
40	chr14:33177400-33179400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr14:33177400-33179400	Enhancers	NHLF	lung
42	chr14:33177400-33179600	Enhancers	Brain Cingulate Gyrus	brain
43	chr14:33177400-33180400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr14:33177400-33180600	Enhancers	Fetal Stomach	stomach
45	chr14:33177400-33181000	Enhancers	Brain Angular Gyrus	brain
46	chr14:33177600-33178000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr14:33177600-33181000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:33177600-33181200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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