Variant report

Variant	rs1031952
Chromosome Location	chr7:124698002-124698003
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124697959..124699891-chr7:124704188..124706087,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1020629	0.87[CHB][hapmap]
rs10256073	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap]
rs10266152	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10269342	0.82[YRI][hapmap]
rs10281773	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10500102	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10954061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap]
rs10954064	0.82[EUR][1000 genomes]
rs11761435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11767519	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs11768553	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs11770818	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs11771004	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1248737	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12531213	0.87[ASN][1000 genomes]
rs12537983	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs12539481	0.83[CEU][hapmap];0.88[CHB][hapmap]
rs12706625	0.87[CHB][hapmap]
rs12706627	0.83[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs13234634	0.86[YRI][hapmap]
rs13240050	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1383749	0.85[YRI][hapmap]
rs1404897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs1471570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap]
rs1481334	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1552116	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1552117	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs1568882	0.98[ASN][1000 genomes]
rs17147723	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs17147889	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2101100	0.83[CEU][hapmap];0.87[CHB][hapmap]
rs2291207	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs2929321	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2929322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs2968868	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34246481	0.87[CHB][hapmap]
rs4360236	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs4501522	0.84[CEU][hapmap];0.88[CHB][hapmap]
rs590516	0.85[ASN][1000 genomes]
rs598102	0.97[ASN][1000 genomes]
rs612391	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs625037	0.87[ASN][1000 genomes]
rs627823	0.93[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.97[ASN][1000 genomes]
rs650653	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[ASN][1000 genomes]
rs651988	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs663056	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[ASN][1000 genomes]
rs664062	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs669273	0.97[ASN][1000 genomes]
rs670910	0.95[ASN][1000 genomes]
rs671359	0.95[ASN][1000 genomes]
rs6946962	0.83[CEU][hapmap];0.85[CHB][hapmap]
rs6965957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs6966054	0.85[CHB][hapmap]
rs719974	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs727521	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7791488	0.93[YRI][hapmap]
rs7797011	0.87[CHB][hapmap]
rs7811124	1.00[CEU][hapmap]
rs967297	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9785002	0.87[CHB][hapmap]
rs9942625	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv889139	chr7:124600505-124767295	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124697600-124698400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:124697800-124698200	Enhancers	Fetal Intestine Large	intestine
3	chr7:124697800-124698400	Enhancers	HepG2	liver
4	chr7:124697800-124698800	Enhancers	Liver	Liver
5	chr7:124698000-124698200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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