Variant report

Variant	rs1032501
Chromosome Location	chr3:23240671-23240672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3732395	0.92[CEU][hapmap];0.98[GIH][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs4283589	0.80[ASN][1000 genomes]
rs6550743	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23237600-23242800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:23237800-23243800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr3:23237800-23244000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:23238000-23243800	Weak transcription	Aorta	Aorta
5	chr3:23239600-23241200	Enhancers	Adipose Nuclei	Adipose
6	chr3:23240000-23240800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:23240000-23241000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:23240000-23241000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:23240000-23241400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:23240000-23242000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:23240400-23240800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:23240600-23241000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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