Variant report

Variant	rs1032665
Chromosome Location	chr3:20886763-20886764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:11966805..11970278-chr3:20885070..20888091,20	K562	blood:
2	chr3:20885773..20889854-chr3:20892035..20895273,4	K562	blood:
3	chr1:11966625..11969718-chr3:20885070..20888090,17	K562	blood:
4	chr1:11967831..11969033-chr3:20886071..20887071,5	HCT-116	colon:
5	chr3:20875856..20878691-chr3:20885550..20887328,2	K562	blood:
6	chr3:20884248..20889854-chr3:20892080..20895253,4	K562	blood:
7	chr1:11967944..11968718-chr3:20886090..20887071,3	NB4	blood:
8	chr3:20882801..20884496-chr3:20885503..20888322,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13080882	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13099272	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1499003	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2102017	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35018463	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59828166	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876598	chr3:20242143-20970042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv999025	chr3:20738244-21042249	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876605	chr3:20798214-20895742	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv834629	chr3:20878902-21057592	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1831300	chr3:20886763-20919920	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1850674	chr3:20886763-20919920	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1032665	UBE2E2	cis	cerebellum	SCAN
rs1032665	UCP3	trans	cerebellum	SCAN
rs1032665	THRB	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:20883600-20887800	Enhancers	Fetal Lung	lung
2	chr3:20883600-20891600	Weak transcription	Psoas Muscle	Psoas
3	chr3:20886000-20887600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:20886400-20886800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr3:20886600-20886800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:20886600-20887600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:20886600-20887600	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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