Variant report

Variant	rs1033778
Chromosome Location	chr10:4163148-4163149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826233..3829471-chr10:4161588..4164936,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1033779	0.97[EUR][1000 genomes]
rs10795136	0.88[ASN][1000 genomes]
rs10904195	0.92[ASN][1000 genomes]
rs1885477	1.00[JPT][hapmap]
rs2397410	0.82[ASN][1000 genomes]
rs4881297	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4160600-4163400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr10:4160600-4163600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:4162600-4163200	Enhancers	Right Atrium	heart
4	chr10:4162600-4163600	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:4162600-4163600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:4162600-4164200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:4162800-4163200	Enhancers	Primary T cells fromperipheralblood	blood
8	chr10:4162800-4163200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr10:4162800-4163200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:4162800-4163400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:4162800-4163600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:4162800-4163600	Enhancers	Primary B cells from cord blood	blood
13	chr10:4162800-4163600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:4162800-4163600	Enhancers	GM12878-XiMat	blood
15	chr10:4162800-4164000	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:4162800-4164000	Enhancers	Right Ventricle	heart
17	chr10:4162800-4164000	Enhancers	Stomach Smooth Muscle	stomach
18	chr10:4162800-4164200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:4162800-4164400	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:4162800-4164400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:4162800-4164600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr10:4162800-4164600	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr10:4162800-4164800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr10:4162800-4165400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:4162800-4165800	Enhancers	Fetal Lung	lung
26	chr10:4163000-4163400	Weak transcription	Fetal Heart	heart
27	chr10:4163000-4163400	Weak transcription	Fetal Thymus	thymus
28	chr10:4163000-4166800	Weak transcription	Pancreas	Pancrea
29	chr10:4163000-4173400	Weak transcription	NHLF	lung

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