Variant report

Variant	rs1036867
Chromosome Location	chr13:76464515-76464516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1015694	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1036868	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10507835	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1323565	0.83[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1323566	0.83[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1323567	0.83[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1323568	0.88[ASN][1000 genomes]
rs1397	0.83[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1399	0.83[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs1400	0.96[CEU][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1550620	0.83[CHB][hapmap]
rs2120066	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs35986631	0.89[ASN][1000 genomes]
rs4329801	0.83[ASN][1000 genomes]
rs4418941	0.81[ASN][1000 genomes]
rs4508318	0.83[ASN][1000 genomes]
rs4572275	0.83[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs4598784	0.83[ASN][1000 genomes]
rs4884024	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4885358	0.83[CHB][hapmap]
rs4885359	0.84[ASN][1000 genomes]
rs4885360	0.84[ASN][1000 genomes]
rs4885361	0.84[ASN][1000 genomes]
rs4885362	1.00[ASN][1000 genomes]
rs6562923	0.92[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7981821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7986419	0.97[ASN][1000 genomes]
rs7986876	0.83[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap]
rs7987971	0.83[ASN][1000 genomes]
rs7995080	0.84[ASN][1000 genomes]
rs9318381	0.83[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9530475	0.93[CHB][hapmap]
rs9530477	0.83[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9530479	0.83[ASN][1000 genomes]
rs9530481	0.84[ASN][1000 genomes]
rs9530483	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9530484	1.00[ASN][1000 genomes]
rs9544060	1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9544061	0.84[GIH][hapmap]
rs9544069	0.84[ASN][1000 genomes]
rs9544071	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9593137	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9600572	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9600574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9600575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9600577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9600578	0.83[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9600579	0.83[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9600581	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9600582	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969394	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1054431	chr13:76460431-76885094	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv541837	chr13:76460431-76885094	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1036867	LMO7	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76440000-76469200	Weak transcription	HSMM	muscle
2	chr13:76461600-76466400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:76462200-76465400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:76462600-76465600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:76463400-76464600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:76463600-76464600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:76463600-76464600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr13:76463600-76464600	Enhancers	K562	blood
9	chr13:76463800-76466000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:76464000-76464600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:76464200-76465800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:76464400-76465600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr13:76464400-76465800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:76464400-76466000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr13:76464400-76468200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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