Variant report

Variant	rs1039826
Chromosome Location	chr2:210493591-210493592
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10174385	0.92[EUR][1000 genomes]
rs10179315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10203283	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10208961	0.85[EUR][1000 genomes]
rs10497931	0.92[EUR][1000 genomes]
rs12694187	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12988159	0.85[EUR][1000 genomes]
rs13000863	0.92[EUR][1000 genomes]
rs13382265	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13412699	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13423655	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13432941	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1396778	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1509467	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1509471	0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843236	0.85[EUR][1000 genomes]
rs1828281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1949041	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1962197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1967262	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2063292	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2663644	0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2663656	0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2710476	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28517694	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60751322	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6435533	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6752060	1.00[EUR][1000 genomes]
rs7566048	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7603837	0.85[EUR][1000 genomes]
rs9288411	1.00[EUR][1000 genomes]
rs992991	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754281	chr2:210484777-210543711	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210476600-210493600	Weak transcription	Aorta	Aorta
2	chr2:210481000-210500400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:210481400-210493600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:210484600-210497200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:210484800-210496000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:210485400-210494400	Weak transcription	Fetal Brain Female	brain
7	chr2:210487200-210494200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:210488800-210494000	Weak transcription	Brain Anterior Caudate	brain
9	chr2:210489600-210493600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr2:210489800-210500400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:210490200-210494200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:210490400-210499800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210490600-210500400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:210492200-210494200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:210493000-210494800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr2:210493000-210495400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:210493200-210493600	Genic enhancers	Brain Germinal Matrix	brain
18	chr2:210493200-210494400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr2:210493400-210493600	Enhancers	Fetal Brain Male	brain
20	chr2:210493400-210493600	ZNF genes & repeats	Pancreas	Pancrea
21	chr2:210493400-210493800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr2:210493400-210493800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr2:210493400-210493800	Genic enhancers	Brain Angular Gyrus	brain
24	chr2:210493400-210494000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:210493400-210494200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr2:210493400-210495000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr2:210493400-210495000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr2:210493400-210495000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr2:210493400-210495000	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr2:210493400-210495200	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr2:210493400-210495200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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