Variant report
| Variant | rs10399960 |
|---|---|
| Chromosome Location | chr1:92923088-92923089 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:90)
| rs_ID | r2[population] |
|---|---|
| rs10399670 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10399724 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10399865 | 1.00[EUR][1000 genomes] |
| rs11164364 | 1.00[EUR][1000 genomes] |
| rs11164660 | 1.00[EUR][1000 genomes] |
| rs11164793 | 1.00[EUR][1000 genomes] |
| rs11164794 | 1.00[EUR][1000 genomes] |
| rs11164795 | 1.00[EUR][1000 genomes] |
| rs11164797 | 1.00[EUR][1000 genomes] |
| rs11166390 | 1.00[EUR][1000 genomes] |
| rs11166543 | 1.00[EUR][1000 genomes] |
| rs12057715 | 1.00[EUR][1000 genomes] |
| rs12057860 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12058147 | 1.00[EUR][1000 genomes] |
| rs12059319 | 1.00[EUR][1000 genomes] |
| rs12059439 | 1.00[EUR][1000 genomes] |
| rs12059473 | 1.00[EUR][1000 genomes] |
| rs12059645 | 1.00[EUR][1000 genomes] |
| rs12062143 | 1.00[EUR][1000 genomes] |
| rs12063053 | 1.00[EUR][1000 genomes] |
| rs12064015 | 1.00[EUR][1000 genomes] |
| rs12064732 | 1.00[EUR][1000 genomes] |
| rs12065163 | 1.00[EUR][1000 genomes] |
| rs12065694 | 1.00[EUR][1000 genomes] |
| rs12065702 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12066980 | 1.00[EUR][1000 genomes] |
| rs12067302 | 1.00[EUR][1000 genomes] |
| rs12068883 | 1.00[EUR][1000 genomes] |
| rs12069582 | 1.00[EUR][1000 genomes] |
| rs12069690 | 1.00[EUR][1000 genomes] |
| rs12069984 | 1.00[EUR][1000 genomes] |
| rs12070123 | 1.00[EUR][1000 genomes] |
| rs12070249 | 1.00[EUR][1000 genomes] |
| rs12071033 | 1.00[EUR][1000 genomes] |
| rs12072804 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12075870 | 1.00[EUR][1000 genomes] |
| rs12076399 | 1.00[EUR][1000 genomes] |
| rs12076954 | 1.00[EUR][1000 genomes] |
| rs12078738 | 1.00[EUR][1000 genomes] |
| rs12080525 | 1.00[EUR][1000 genomes] |
| rs12081539 | 1.00[EUR][1000 genomes] |
| rs12083424 | 1.00[EUR][1000 genomes] |
| rs12084412 | 1.00[EUR][1000 genomes] |
| rs12086354 | 1.00[EUR][1000 genomes] |
| rs12088142 | 1.00[EUR][1000 genomes] |
| rs12088549 | 1.00[EUR][1000 genomes] |
| rs12088562 | 1.00[EUR][1000 genomes] |
| rs12089666 | 1.00[EUR][1000 genomes] |
| rs12091427 | 1.00[EUR][1000 genomes] |
| rs12092747 | 1.00[EUR][1000 genomes] |
| rs12093038 | 1.00[EUR][1000 genomes] |
| rs12093590 | 1.00[EUR][1000 genomes] |
| rs12093905 | 1.00[EUR][1000 genomes] |
| rs12094086 | 1.00[EUR][1000 genomes] |
| rs12097184 | 1.00[EUR][1000 genomes] |
| rs1487538 | 1.00[EUR][1000 genomes] |
| rs17100275 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17131614 | 1.00[EUR][1000 genomes] |
| rs17131625 | 1.00[EUR][1000 genomes] |
| rs17131626 | 1.00[EUR][1000 genomes] |
| rs17131634 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28696358 | 1.00[EUR][1000 genomes] |
| rs28716853 | 1.00[EUR][1000 genomes] |
| rs35166258 | 1.00[EUR][1000 genomes] |
| rs58471288 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59366523 | 1.00[EUR][1000 genomes] |
| rs59385116 | 1.00[EUR][1000 genomes] |
| rs59800659 | 1.00[EUR][1000 genomes] |
| rs60332284 | 1.00[EUR][1000 genomes] |
| rs6657876 | 1.00[EUR][1000 genomes] |
| rs6674426 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6679077 | 1.00[EUR][1000 genomes] |
| rs72958765 | 1.00[EUR][1000 genomes] |
| rs72958768 | 1.00[EUR][1000 genomes] |
| rs72958786 | 1.00[EUR][1000 genomes] |
| rs72958791 | 1.00[EUR][1000 genomes] |
| rs72960809 | 1.00[EUR][1000 genomes] |
| rs72960813 | 1.00[EUR][1000 genomes] |
| rs72960817 | 1.00[EUR][1000 genomes] |
| rs72960824 | 1.00[EUR][1000 genomes] |
| rs72960880 | 1.00[EUR][1000 genomes] |
| rs72960900 | 1.00[EUR][1000 genomes] |
| rs72962603 | 1.00[EUR][1000 genomes] |
| rs72962608 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72962610 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72962621 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72962625 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72962628 | 1.00[EUR][1000 genomes] |
| rs7512045 | 1.00[EUR][1000 genomes] |
| rs9660398 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:92921000-92923200 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
| 2 | chr1:92923000-92924400 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
