Variant report

Variant	rs10399962
Chromosome Location	chr10:25730280-25730281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25725645..25727300-chr10:25728753..25731180,2	K562	blood:
2	chr10:25726717..25730282-chr10:25730723..25733512,4	K562	blood:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10508694	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs10741077	0.87[JPT][hapmap]
rs10741087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764539	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10764543	0.88[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs10828774	0.87[JPT][hapmap]
rs10828775	0.93[JPT][hapmap]
rs10828777	0.93[JPT][hapmap]
rs10828778	0.87[JPT][hapmap]
rs10828791	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs10828792	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs10828793	0.88[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs10828807	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11014527	0.92[CHB][hapmap];0.80[JPT][hapmap]
rs11014528	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs11014529	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs11014530	0.89[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs11014550	0.83[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs11014553	0.89[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs11014554	0.89[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs11014558	0.94[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11014559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014561	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014564	0.88[CEU][hapmap]
rs1122776	0.92[JPT][hapmap]
rs1148154	0.93[JPT][hapmap]
rs11818261	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs12240665	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12249852	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs12251868	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs12251917	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs12254479	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs12256851	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs12258671	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs12259043	0.88[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs12259696	0.89[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs12356315	0.83[CEU][hapmap]
rs12358447	0.94[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs12762462	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs12764415	0.88[CEU][hapmap]
rs12765005	0.88[CEU][hapmap]
rs12770990	0.88[CEU][hapmap]
rs12773262	0.94[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap]
rs1329259	0.87[JPT][hapmap]
rs1329263	0.87[JPT][hapmap]
rs1329265	0.87[JPT][hapmap]
rs1340002	0.85[JPT][hapmap]
rs1341963	0.93[JPT][hapmap]
rs1341964	0.87[JPT][hapmap]
rs1341966	0.87[JPT][hapmap]
rs1410932	0.87[JPT][hapmap]
rs1413397	0.87[JPT][hapmap]
rs1576317	0.87[JPT][hapmap]
rs1576320	0.80[JPT][hapmap]
rs1590836	0.87[JPT][hapmap]
rs1591249	0.87[JPT][hapmap]
rs1591250	0.87[JPT][hapmap]
rs1612200	0.87[JPT][hapmap]
rs1628986	0.93[JPT][hapmap]
rs16925850	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs16925877	0.88[CEU][hapmap]
rs1754251	0.87[JPT][hapmap]
rs1754253	0.83[JPT][hapmap]
rs1754260	0.87[JPT][hapmap]
rs1754268	0.87[JPT][hapmap]
rs1760716	0.93[JPT][hapmap]
rs1760718	0.93[JPT][hapmap]
rs1760727	0.93[JPT][hapmap]
rs1760728	0.93[JPT][hapmap]
rs1760733	0.87[JPT][hapmap]
rs1760758	0.87[JPT][hapmap]
rs1760759	0.87[JPT][hapmap]
rs1760762	0.87[JPT][hapmap]
rs1760763	0.87[JPT][hapmap]
rs1760766	0.87[JPT][hapmap]
rs1760767	0.93[JPT][hapmap]
rs1773608	0.87[JPT][hapmap]
rs1773612	0.87[JPT][hapmap]
rs1773614	0.87[JPT][hapmap]
rs1773616	0.93[JPT][hapmap]
rs1773617	0.87[JPT][hapmap]
rs1773618	0.87[JPT][hapmap]
rs1773622	0.87[JPT][hapmap]
rs1773623	0.87[JPT][hapmap]
rs1773625	0.86[JPT][hapmap]
rs1773649	0.93[JPT][hapmap]
rs1773650	0.93[JPT][hapmap]
rs1773689	0.87[JPT][hapmap]
rs1773690	0.87[JPT][hapmap]
rs1855461	0.87[JPT][hapmap]
rs2795044	0.93[JPT][hapmap]
rs2807253	0.85[JPT][hapmap]
rs2807255	0.93[JPT][hapmap]
rs4351726	0.87[JPT][hapmap]
rs4431923	0.89[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs489052	0.87[JPT][hapmap]
rs489186	0.87[JPT][hapmap]
rs495338	0.93[JPT][hapmap]
rs495456	0.87[JPT][hapmap]
rs509285	0.93[JPT][hapmap]
rs516071	0.93[JPT][hapmap]
rs541206	0.81[JPT][hapmap]
rs543850	0.87[JPT][hapmap]
rs573812	0.87[JPT][hapmap]
rs7079892	0.87[JPT][hapmap]
rs7094439	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs824590	0.87[JPT][hapmap]
rs824592	0.87[JPT][hapmap]
rs824597	0.93[JPT][hapmap]
rs824598	0.87[JPT][hapmap]
rs824599	0.85[JPT][hapmap]
rs862192	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761584	chr10:25727933-25732659	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25728400-25731200	Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr10:25729000-25730800	Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr10:25729400-25730600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr10:25730000-25730600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:25730000-25730600	Enhancers	Fetal Heart	heart
6	chr10:25730200-25731200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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