Variant report

Variant	rs10399963
Chromosome Location	chr10:117054883-117054884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr10:117054658-117055041	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ATRNL1	TF binding region

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10400056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10400160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10466204	1.00[EUR][1000 genomes]
rs10885652	1.00[EUR][1000 genomes]
rs10885665	1.00[EUR][1000 genomes]
rs11197057	1.00[EUR][1000 genomes]
rs11197058	1.00[EUR][1000 genomes]
rs11197060	1.00[EUR][1000 genomes]
rs11197061	1.00[EUR][1000 genomes]
rs11197067	1.00[EUR][1000 genomes]
rs11197070	1.00[EUR][1000 genomes]
rs11197082	1.00[EUR][1000 genomes]
rs11197089	1.00[EUR][1000 genomes]
rs11197090	1.00[EUR][1000 genomes]
rs11197092	1.00[EUR][1000 genomes]
rs11197096	1.00[EUR][1000 genomes]
rs11197097	1.00[EUR][1000 genomes]
rs11197104	1.00[EUR][1000 genomes]
rs11197119	1.00[EUR][1000 genomes]
rs11197121	1.00[EUR][1000 genomes]
rs11819446	1.00[EUR][1000 genomes]
rs12098502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241864	1.00[EUR][1000 genomes]
rs12245856	1.00[EUR][1000 genomes]
rs12248612	1.00[EUR][1000 genomes]
rs12248846	1.00[EUR][1000 genomes]
rs12252344	1.00[EUR][1000 genomes]
rs12255157	1.00[EUR][1000 genomes]
rs12264153	1.00[EUR][1000 genomes]
rs12267097	1.00[EUR][1000 genomes]
rs13376959	1.00[EUR][1000 genomes]
rs1819630	1.00[AMR][1000 genomes]
rs2197305	1.00[EUR][1000 genomes]
rs2252627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28564357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28842563	1.00[EUR][1000 genomes]
rs57423028	1.00[EUR][1000 genomes]
rs60927673	1.00[EUR][1000 genomes]
rs647982	1.00[AMR][1000 genomes]
rs6585330	1.00[YRI][hapmap]
rs7069988	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7070487	1.00[EUR][1000 genomes]
rs7074608	1.00[EUR][1000 genomes]
rs7077627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7082007	1.00[EUR][1000 genomes]
rs7082592	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7085221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7093497	0.89[YRI][hapmap];1.00[AFR][1000 genomes]
rs7093931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7098585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363470	1.00[EUR][1000 genomes]
rs7893964	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7894112	1.00[EUR][1000 genomes]
rs7896027	1.00[EUR][1000 genomes]
rs7896852	1.00[YRI][hapmap]
rs7897375	1.00[EUR][1000 genomes]
rs7899771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7900110	1.00[EUR][1000 genomes]
rs7902966	1.00[EUR][1000 genomes]
rs7906377	1.00[YRI][hapmap]
rs7906551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907668	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7908005	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7910204	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913288	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7917672	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918291	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7919754	1.00[YRI][hapmap]
rs7920152	1.00[EUR][1000 genomes]
rs7920260	1.00[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117050600-117064000	Weak transcription	Aorta	Aorta
2	chr10:117050600-117079200	Weak transcription	Ovary	ovary
3	chr10:117053800-117064400	Weak transcription	Brain Germinal Matrix	brain
4	chr10:117054400-117055200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:117054400-117055600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:117054600-117055000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:117054600-117062000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:117054600-117066200	Weak transcription	Fetal Brain Male	brain
9	chr10:117054800-117063200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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