Variant report

Variant	rs10399986
Chromosome Location	chr10:50855639-50855640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10400026	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10400027	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10400097	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10400098	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10400121	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10400152	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10400162	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10400182	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17010116	0.85[AMR][1000 genomes]
rs4253017	0.85[AMR][1000 genomes]
rs4253025	0.85[AMR][1000 genomes]
rs4253037	0.85[AMR][1000 genomes]
rs4253052	0.85[AMR][1000 genomes]
rs4253074	0.85[AMR][1000 genomes]
rs4253075	0.85[AMR][1000 genomes]
rs4253096	0.85[AMR][1000 genomes]
rs4253111	0.85[AMR][1000 genomes]
rs4253143	0.85[AMR][1000 genomes]
rs4253146	0.85[AMR][1000 genomes]
rs4253197	0.85[AMR][1000 genomes]
rs57612136	0.85[AMR][1000 genomes]
rs58927526	0.85[AMR][1000 genomes]
rs59551969	0.83[AMR][1000 genomes]
rs60626181	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60959867	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61115650	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61132699	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61352664	0.85[AMR][1000 genomes]
rs73297732	0.85[AMR][1000 genomes]
rs73297734	0.85[AMR][1000 genomes]
rs73297740	0.85[AMR][1000 genomes]
rs73297743	0.85[AMR][1000 genomes]
rs73297744	0.85[AMR][1000 genomes]
rs73297746	0.85[AMR][1000 genomes]
rs73305578	0.85[AMR][1000 genomes]
rs73305599	0.85[AMR][1000 genomes]
rs73311019	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1037405	chr10:50800817-50940545	Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv895378	chr10:50801342-50955649	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50847000-50860600	Weak transcription	Right Atrium	heart
2	chr10:50853200-50856000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr10:50854800-50855800	Weak transcription	Spleen	Spleen
4	chr10:50854800-50856400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50854800-50856400	Enhancers	Dnd41	blood
6	chr10:50854800-50857400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:50854800-50859000	Enhancers	Fetal Thymus	thymus
8	chr10:50855200-50856400	Weak transcription	Placenta	Placenta

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