Variant report

Variant	rs1040227
Chromosome Location	chr2:181886024-181886025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10168243	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11883509	0.86[ASN][1000 genomes]
rs13406825	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13418851	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13425173	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2292855	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73037093	0.80[ASN][1000 genomes]
rs73037095	0.80[ASN][1000 genomes]
rs73037098	0.82[ASN][1000 genomes]
rs7355651	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181856800-181897200	Weak transcription	Primary B cells from cord blood	blood
2	chr2:181857800-181901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:181860000-181894800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:181871000-181886600	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:181873400-181901000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:181873600-181887800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:181873600-181889600	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:181883400-181886800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr2:181885000-181890600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:181885600-181888000	Weak transcription	Osteobl	bone
11	chr2:181885800-181887600	Weak transcription	Brain Angular Gyrus	brain
12	chr2:181885800-181889600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:181886000-181901200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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