Variant report

Variant	rs10407391
Chromosome Location	chr19:43262966-43262967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:93)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:93 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:43262684-43263257	SK-N-SH	brain:	n/a	n/a
2	CTCF	chr19:43262913-43263261	A549	lung:	n/a	n/a
3	CTCF	chr19:43262940-43263090	A549	lung:	n/a	n/a
4	RAD21	chr19:43262884-43263194	H1-hESC	embryonic stem cell:	n/a	n/a
5	RAD21	chr19:43262913-43263280	IMR90	lung:	n/a	n/a
6	CTCF	chr19:43262820-43263253	K562	blood:	n/a	n/a
7	CTCF	chr19:43262894-43263260	K562	blood:	n/a	n/a
8	CTCF	chr19:43262899-43263177	Gliobla	brain:	n/a	n/a
9	CTCF	chr19:43262931-43263228	HUVEC	blood vessel:	n/a	n/a
10	CTCF	chr19:43262820-43262970	GM06990	blood:	n/a	n/a
11	CTCF	chr19:43262914-43263154	GM12891	blood:	n/a	n/a
12	CTCF	chr19:43262960-43263110	HBMEC	blood vessel:	n/a	n/a
13	CTCF	chr19:43262840-43263130	HL-60	blood:	n/a	n/a
14	CTCF	chr19:43262960-43263110	K562	blood:	n/a	n/a
15	CTCF	chr19:43262940-43263090	HMEC	breast:	n/a	n/a
16	CTCF	chr19:43262960-43263110	GM12875	blood:	n/a	n/a
17	CTCF	chr19:43262920-43263070	GM12868	blood:	n/a	n/a
18	CTCF	chr19:43262925-43263123	LNCaP	prostate:	n/a	n/a
19	CTCF	chr19:43262900-43263050	BE2_C	brain:	n/a	n/a
20	CTCF	chr19:43262905-43263164	K562	blood:	n/a	n/a
21	MYC	chr19:43262966-43263045	K562	blood:	n/a	n/a
22	CTCFL	chr19:43262919-43263015	K562	blood:	n/a	n/a
23	CTCF	chr19:43262929-43263245	MCF-7	breast:	n/a	n/a
24	CTCF	chr19:43262913-43263237	MCF-7	breast:	n/a	n/a
25	CTCF	chr19:43262944-43263066	SK-N-SH_RA	brain:	n/a	n/a
26	CTCF	chr19:43262927-43263133	GM12892	blood:	n/a	n/a
27	IRF4	chr19:43262794-43263186	GM12878	blood:	n/a	n/a
28	CTCF	chr19:43262921-43263258	NHEK	skin:	n/a	n/a
29	CTCF	chr19:43262945-43263066	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr19:43262692-43263417	A549	lung:	n/a	n/a
31	RAD21	chr19:43262810-43263224	SK-N-SH_RA	brain:	n/a	n/a
32	SMC3	chr19:43262695-43263247	SK-N-SH	brain:	n/a	n/a
33	CTCF	chr19:43262925-43263060	Pancreas_OC	pancreas:	n/a	n/a
34	CTCF	chr19:43262927-43263229	Fibrobl	skin:	n/a	n/a
35	CTCF	chr19:43262960-43263110	A549	lung:	n/a	n/a
36	FOSL2	chr19:43262828-43263149	HepG2	liver:	n/a	n/a
37	CTCF	chr19:43262773-43263402	A549	lung:	n/a	n/a
38	CTCF	chr19:43262880-43263030	GM12868	blood:	n/a	n/a
39	CTCF	chr19:43262882-43263203	HepG2	liver:	n/a	n/a
40	CTCF	chr19:43262916-43263088	GM20000	blood:	n/a	n/a
41	CTCF	chr19:43262960-43263110	BJ	skin:	n/a	n/a
42	CTCF	chr19:43262906-43263129	K562	blood:	n/a	n/a
43	CTCF	chr19:43262930-43263147	GM12878	blood:	n/a	n/a
44	IRF4	chr19:43262736-43263285	GM12878	blood:	n/a	n/a
45	CTCF	chr19:43262892-43263104	GM10266	blood:	n/a	n/a
46	CTCF	chr19:43262960-43263110	GM12878	blood:	n/a	n/a
47	CTCF	chr19:43262960-43263110	AG09309	skin:	n/a	n/a
48	CTCF	chr19:43262880-43263030	GM12873	blood:	n/a	n/a
49	CTCF	chr19:43262907-43263103	GM13976	blood:	n/a	n/a
50	CTCF	chr19:43262960-43263110	GM12874	blood:	n/a	n/a

No data

Variant related genes	Relation type
PSG8	TF binding region

Extended variants
information (count: 204 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10401640	1.00[EUR][1000 genomes]
rs10401873	1.00[EUR][1000 genomes]
rs10402540	1.00[EUR][1000 genomes]
rs10402596	1.00[EUR][1000 genomes]
rs10402603	1.00[EUR][1000 genomes]
rs10402641	1.00[EUR][1000 genomes]
rs10402986	1.00[EUR][1000 genomes]
rs10402996	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10403391	1.00[EUR][1000 genomes]
rs10403611	1.00[EUR][1000 genomes]
rs10403615	1.00[EUR][1000 genomes]
rs10403917	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10404396	1.00[EUR][1000 genomes]
rs10405060	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10405463	1.00[EUR][1000 genomes]
rs10406600	1.00[EUR][1000 genomes]
rs10406619	1.00[EUR][1000 genomes]
rs10406818	1.00[EUR][1000 genomes]
rs10407027	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407064	1.00[EUR][1000 genomes]
rs10407243	1.00[EUR][1000 genomes]
rs10407493	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407494	1.00[EUR][1000 genomes]
rs10407700	1.00[EUR][1000 genomes]
rs10407986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10408329	1.00[EUR][1000 genomes]
rs10408400	1.00[EUR][1000 genomes]
rs10409320	1.00[EUR][1000 genomes]
rs10409415	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10409699	1.00[EUR][1000 genomes]
rs10411057	1.00[EUR][1000 genomes]
rs10411164	1.00[EUR][1000 genomes]
rs10411967	1.00[EUR][1000 genomes]
rs10412319	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415943	1.00[EUR][1000 genomes]
rs10417369	1.00[EUR][1000 genomes]
rs10417976	1.00[EUR][1000 genomes]
rs10418747	1.00[EUR][1000 genomes]
rs10420150	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10422629	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10422702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423326	1.00[EUR][1000 genomes]
rs10423379	1.00[EUR][1000 genomes]
rs10423824	1.00[EUR][1000 genomes]
rs10423908	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10424023	1.00[EUR][1000 genomes]
rs10424524	1.00[EUR][1000 genomes]
rs10424957	1.00[EUR][1000 genomes]
rs10425091	1.00[EUR][1000 genomes]
rs10425119	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425265	1.00[EUR][1000 genomes]
rs10425787	1.00[EUR][1000 genomes]
rs10426588	1.00[EUR][1000 genomes]
rs11083664	1.00[EUR][1000 genomes]
rs11413277	1.00[EUR][1000 genomes]
rs11879250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11880709	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11881268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12104420	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13339740	1.00[EUR][1000 genomes]
rs13344152	1.00[EUR][1000 genomes]
rs13345507	1.00[EUR][1000 genomes]
rs13346124	1.00[EUR][1000 genomes]
rs13346929	1.00[EUR][1000 genomes]
rs13347048	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13347077	1.00[EUR][1000 genomes]
rs13347114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2107463	1.00[EUR][1000 genomes]
rs28374173	1.00[EUR][1000 genomes]
rs28374334	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28402730	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418559	1.00[EUR][1000 genomes]
rs28463867	1.00[AMR][1000 genomes]
rs28493914	1.00[EUR][1000 genomes]
rs28526801	1.00[EUR][1000 genomes]
rs28531714	1.00[EUR][1000 genomes]
rs28542327	1.00[EUR][1000 genomes]
rs28546375	1.00[EUR][1000 genomes]
rs28583453	1.00[EUR][1000 genomes]
rs28664906	1.00[EUR][1000 genomes]
rs28673196	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28696857	0.90[AFR][1000 genomes]
rs28697869	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28702564	1.00[EUR][1000 genomes]
rs28832085	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56705946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59841198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60019746	1.00[EUR][1000 genomes]
rs60726102	1.00[EUR][1000 genomes]
rs61138646	1.00[EUR][1000 genomes]
rs61224275	1.00[EUR][1000 genomes]
rs61286815	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61442953	1.00[EUR][1000 genomes]
rs62112122	0.84[AFR][1000 genomes]
rs73547154	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7507181	1.00[EUR][1000 genomes]
rs8110425	1.00[EUR][1000 genomes]
rs9304611	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:103 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
2	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758501	chr19:43042747-43899053	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	esv2758763	chr19:43042747-43899053	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv428023	chr19:43042747-43899053	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	esv2422227	chr19:43059426-43669485	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1056270	chr19:43139043-43542819	Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv544007	chr19:43141984-43529861	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1061798	chr19:43141984-43741311	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv544008	chr19:43141984-43741311	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	esv2754239	chr19:43145417-43559330	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	esv1845826	chr19:43152829-43454902	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	esv2757697	chr19:43164418-43870887	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
14	nsv1055872	chr19:43173614-44075193	Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
15	nsv544009	chr19:43173614-44075193	Enhancers ZNF genes & repeats Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	nsv544010	chr19:43173814-43584478	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv544011	chr19:43173814-43741311	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	esv2751786	chr19:43198035-43685930	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv516973	chr19:43202770-43866823	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
20	nsv869916	chr19:43203105-43584433	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
21	nsv869571	chr19:43203105-43802656	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
22	nsv869565	chr19:43203105-43810421	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
23	nsv963056	chr19:43203249-43798708	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
24	nsv9730	chr19:43203459-43802656	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
25	esv1812820	chr19:43203937-43803388	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
26	nsv1057113	chr19:43211270-43354440	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	esv1808074	chr19:43214215-43805847	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
28	esv1813803	chr19:43214415-43805651	Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
29	esv2763121	chr19:43215328-43846394	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
30	nsv510768	chr19:43217357-43299363	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
31	nsv833835	chr19:43220207-43423373	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
32	nsv428364	chr19:43220207-43435444	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
33	nsv1056871	chr19:43224550-43361690	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
34	nsv1055747	chr19:43224550-43362640	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
35	nsv1065465	chr19:43224550-43368923	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
36	nsv1055726	chr19:43224550-43370644	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
37	esv1846846	chr19:43225921-43774853	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
38	esv1805299	chr19:43227458-43790318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
39	nsv1063192	chr19:43228125-43354440	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
40	nsv1064932	chr19:43228125-43362640	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
41	nsv1059355	chr19:43228125-43370644	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
42	nsv1060654	chr19:43228125-43451808	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
43	nsv911809	chr19:43233048-43374601	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
44	nsv911810	chr19:43233048-43629573	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
45	esv2760524	chr19:43237611-43805328	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
46	esv3349332	chr19:43237675-43263019	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
47	nsv1066275	chr19:43237764-43343479	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
48	nsv1058244	chr19:43237764-43349837	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
49	nsv1064141	chr19:43237764-43354440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
50	nsv1063131	chr19:43237764-43362640	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:43262600-43263200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr19:43262600-43264200	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links