Variant report

Variant	rs10408329
Chromosome Location	chr19:43358402-43358403
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PSG1-1	chr19:43358101-43358466	NONHSAT066571
2	lnc-PSG1-1	chr19:43358101-43358466	NONHSAT146988

Extended variants
information (count: 613 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10401640	1.00[EUR][1000 genomes]
rs10401873	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10402540	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10402596	1.00[EUR][1000 genomes]
rs10402603	1.00[EUR][1000 genomes]
rs10402641	1.00[EUR][1000 genomes]
rs10402756	1.00[EUR][1000 genomes]
rs10402986	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10402996	1.00[EUR][1000 genomes]
rs10403391	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10403611	1.00[EUR][1000 genomes]
rs10403615	1.00[EUR][1000 genomes]
rs10403699	1.00[EUR][1000 genomes]
rs10403917	1.00[EUR][1000 genomes]
rs10404324	1.00[EUR][1000 genomes]
rs10404396	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10404780	1.00[EUR][1000 genomes]
rs10404891	1.00[EUR][1000 genomes]
rs10405060	1.00[EUR][1000 genomes]
rs10405463	1.00[EUR][1000 genomes]
rs10405494	1.00[EUR][1000 genomes]
rs10405998	1.00[EUR][1000 genomes]
rs10406600	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406619	1.00[EUR][1000 genomes]
rs10406818	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10406831	1.00[EUR][1000 genomes]
rs10407064	1.00[EUR][1000 genomes]
rs10407243	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10407391	1.00[EUR][1000 genomes]
rs10407493	1.00[EUR][1000 genomes]
rs10407494	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10407700	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10407986	1.00[EUR][1000 genomes]
rs10408003	1.00[EUR][1000 genomes]
rs10408400	1.00[EUR][1000 genomes]
rs10409165	1.00[EUR][1000 genomes]
rs10409320	1.00[EUR][1000 genomes]
rs10409415	1.00[EUR][1000 genomes]
rs10409699	1.00[EUR][1000 genomes]
rs10410172	1.00[EUR][1000 genomes]
rs10411057	1.00[EUR][1000 genomes]
rs10411967	1.00[EUR][1000 genomes]
rs10414928	1.00[EUR][1000 genomes]
rs10415943	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416158	1.00[EUR][1000 genomes]
rs10416604	1.00[EUR][1000 genomes]
rs10417369	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10417976	1.00[EUR][1000 genomes]
rs10418747	1.00[EUR][1000 genomes]
rs10419056	1.00[EUR][1000 genomes]
rs10419290	1.00[EUR][1000 genomes]
rs10420037	1.00[EUR][1000 genomes]
rs10421405	1.00[EUR][1000 genomes]
rs10422629	1.00[EUR][1000 genomes]
rs10422668	1.00[EUR][1000 genomes]
rs10422685	1.00[EUR][1000 genomes]
rs10422702	1.00[EUR][1000 genomes]
rs10422703	1.00[EUR][1000 genomes]
rs10423326	1.00[EUR][1000 genomes]
rs10423379	1.00[EUR][1000 genomes]
rs10423386	1.00[EUR][1000 genomes]
rs10423473	1.00[EUR][1000 genomes]
rs10423824	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10423908	1.00[EUR][1000 genomes]
rs10424023	1.00[EUR][1000 genomes]
rs10424524	1.00[EUR][1000 genomes]
rs10424712	1.00[EUR][1000 genomes]
rs10424755	1.00[EUR][1000 genomes]
rs10424957	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10425091	1.00[EUR][1000 genomes]
rs10425119	1.00[EUR][1000 genomes]
rs10425123	1.00[EUR][1000 genomes]
rs10425265	1.00[EUR][1000 genomes]
rs10425787	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10426588	1.00[EUR][1000 genomes]
rs11083664	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11413277	1.00[EUR][1000 genomes]
rs11879250	1.00[EUR][1000 genomes]
rs11880709	1.00[EUR][1000 genomes]
rs11881268	1.00[EUR][1000 genomes]
rs12104420	1.00[EUR][1000 genomes]
rs13339740	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13344152	1.00[EUR][1000 genomes]
rs13345507	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13346124	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13346929	1.00[EUR][1000 genomes]
rs13347048	1.00[EUR][1000 genomes]
rs13347077	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13347114	1.00[EUR][1000 genomes]
rs2107463	1.00[EUR][1000 genomes]
rs28374173	1.00[EUR][1000 genomes]
rs28374334	1.00[EUR][1000 genomes]
rs28376977	0.89[AFR][1000 genomes]
rs28402730	1.00[EUR][1000 genomes]
rs28418559	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28447290	1.00[EUR][1000 genomes]
rs28493914	1.00[EUR][1000 genomes]
rs28526801	1.00[EUR][1000 genomes]
rs28531714	1.00[EUR][1000 genomes]
rs28542327	1.00[EUR][1000 genomes]
rs28546375	1.00[EUR][1000 genomes]
rs28578255	1.00[EUR][1000 genomes]
rs28583453	1.00[EUR][1000 genomes]
rs28633828	1.00[EUR][1000 genomes]
rs28645260	1.00[EUR][1000 genomes]
rs28656257	1.00[EUR][1000 genomes]
rs28664906	1.00[EUR][1000 genomes]
rs28669719	1.00[EUR][1000 genomes]
rs28673196	1.00[EUR][1000 genomes]
rs28702564	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28704748	1.00[EUR][1000 genomes]
rs28735872	1.00[EUR][1000 genomes]
rs28758937	1.00[EUR][1000 genomes]
rs28832085	1.00[EUR][1000 genomes]
rs59841198	1.00[EUR][1000 genomes]
rs60019746	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60726102	1.00[EUR][1000 genomes]
rs61138646	1.00[EUR][1000 genomes]
rs61224275	1.00[EUR][1000 genomes]
rs61286815	1.00[EUR][1000 genomes]
rs61442953	1.00[EUR][1000 genomes]
rs73547154	1.00[EUR][1000 genomes]
rs73547155	1.00[EUR][1000 genomes]
rs73553515	1.00[EUR][1000 genomes]
rs7507181	1.00[EUR][1000 genomes]
rs8110425	1.00[EUR][1000 genomes]
rs9304611	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:486 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
2	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758501	chr19:43042747-43899053	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	esv2758763	chr19:43042747-43899053	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv428023	chr19:43042747-43899053	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	esv2422227	chr19:43059426-43669485	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1056270	chr19:43139043-43542819	Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv544007	chr19:43141984-43529861	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1061798	chr19:43141984-43741311	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv544008	chr19:43141984-43741311	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	esv2754239	chr19:43145417-43559330	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	esv1845826	chr19:43152829-43454902	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	esv2757697	chr19:43164418-43870887	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
14	nsv1055872	chr19:43173614-44075193	Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
15	nsv544009	chr19:43173614-44075193	Enhancers ZNF genes & repeats Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	nsv544010	chr19:43173814-43584478	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv544011	chr19:43173814-43741311	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	esv2751786	chr19:43198035-43685930	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
19	nsv516973	chr19:43202770-43866823	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
20	nsv869916	chr19:43203105-43584433	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
21	nsv869571	chr19:43203105-43802656	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
22	nsv869565	chr19:43203105-43810421	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
23	nsv963056	chr19:43203249-43798708	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
24	nsv9730	chr19:43203459-43802656	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
25	esv1812820	chr19:43203937-43803388	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
26	esv1808074	chr19:43214215-43805847	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
27	esv1813803	chr19:43214415-43805651	Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
28	esv2763121	chr19:43215328-43846394	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
29	nsv833835	chr19:43220207-43423373	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
30	nsv428364	chr19:43220207-43435444	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv1056871	chr19:43224550-43361690	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
32	nsv1055747	chr19:43224550-43362640	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
33	nsv1065465	chr19:43224550-43368923	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
34	nsv1055726	chr19:43224550-43370644	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
35	esv1846846	chr19:43225921-43774853	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
36	esv1805299	chr19:43227458-43790318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
37	nsv1064932	chr19:43228125-43362640	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
38	nsv1059355	chr19:43228125-43370644	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
39	nsv1060654	chr19:43228125-43451808	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
40	nsv911809	chr19:43233048-43374601	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
41	nsv911810	chr19:43233048-43629573	Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
42	esv2760524	chr19:43237611-43805328	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
43	nsv1063131	chr19:43237764-43362640	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
44	nsv1055408	chr19:43237764-43377275	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
45	nsv1061598	chr19:43237764-43415712	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
46	esv34661	chr19:43240379-43673190	Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
47	esv2751787	chr19:43240379-43685930	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	esv2751788	chr19:43240379-43711592	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv432049	chr19:43240379-43711592	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
50	esv2751789	chr19:43240379-43731159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:43354400-43358600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr19:43355800-43360400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr19:43356400-43360000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr19:43356400-43360400	Weak transcription	Brain Hippocampus Middle	brain
5	chr19:43357600-43361600	Weak transcription	NHEK	skin
6	chr19:43357600-43361800	Weak transcription	A549	lung
7	chr19:43357600-43378800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr19:43358000-43359400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr19:43358200-43358800	Enhancers	Placenta	Placenta
10	chr19:43358200-43360200	Weak transcription	Spleen	Spleen
11	chr19:43358200-43360800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr19:43358200-43361800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr19:43358400-43360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr19:43358400-43361400	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links