Variant report

Variant	rs10412442
Chromosome Location	chr19:36900647-36900648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36895506..36897062-chr19:36899280..36901611,2	K562	blood:

Variant related genes	Relation type
ENSG00000181007	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10401909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10404844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10409616	1.00[AMR][1000 genomes]
rs10414175	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10415323	1.00[AMR][1000 genomes]
rs10416695	1.00[AMR][1000 genomes]
rs10417692	1.00[AMR][1000 genomes]
rs10418536	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10419429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10419508	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10425490	1.00[AMR][1000 genomes]
rs10425511	1.00[AMR][1000 genomes]
rs13345784	1.00[AMR][1000 genomes]
rs13346906	1.00[AMR][1000 genomes]
rs28628824	1.00[AMR][1000 genomes]
rs56917177	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833816	chr19:36824257-37034287	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv1066026	chr19:36878441-36947928	ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36880400-36904600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr19:36882200-36908800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:36882400-36907600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:36882600-36904200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:36883000-36905200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
6	chr19:36885600-36908000	Weak transcription	K562	blood
7	chr19:36886400-36901000	Weak transcription	Stomach Mucosa	stomach
8	chr19:36888400-36901200	Strong transcription	Brain Hippocampus Middle	brain
9	chr19:36889800-36908200	Weak transcription	HepG2	liver
10	chr19:36890400-36901400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr19:36891000-36904800	Strong transcription	Dnd41	blood
12	chr19:36891200-36901400	ZNF genes & repeats	A549	lung
13	chr19:36891800-36908200	Weak transcription	Fetal Heart	heart
14	chr19:36891800-36908200	Weak transcription	Hela-S3	cervix
15	chr19:36892400-36901400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr19:36892400-36901600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr19:36894400-36900800	Strong transcription	Placenta Amnion	Placenta Amnion
18	chr19:36894400-36901000	Strong transcription	Brain Cingulate Gyrus	brain
19	chr19:36894400-36901200	Strong transcription	Primary B cells from peripheral blood	blood
20	chr19:36894400-36901400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr19:36894400-36901600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
22	chr19:36894400-36902600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr19:36894600-36900800	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr19:36894600-36900800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr19:36894600-36901000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr19:36894600-36901200	Strong transcription	NHDF-Ad	bronchial
27	chr19:36894800-36901000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
28	chr19:36894800-36901200	Strong transcription	Colon Smooth Muscle	Colon
29	chr19:36895000-36900800	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr19:36895000-36900800	Strong transcription	Brain Anterior Caudate	brain
31	chr19:36895000-36901000	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr19:36895000-36901200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr19:36895000-36901400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr19:36895000-36901400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:36895000-36908200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr19:36895200-36901200	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr19:36895400-36901800	Strong transcription	Left Ventricle	heart
38	chr19:36895600-36901400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr19:36895600-36901400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr19:36896400-36901800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr19:36896600-36901000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr19:36896600-36908200	Weak transcription	Right Ventricle	heart
43	chr19:36896600-36908400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr19:36897200-36908200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr19:36897800-36901200	ZNF genes & repeats	GM12878-XiMat	blood
46	chr19:36898200-36900800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
47	chr19:36898200-36901400	Strong transcription	Placenta	Placenta
48	chr19:36898400-36900800	Strong transcription	Fetal Intestine Large	intestine
49	chr19:36898400-36901000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr19:36898400-36901000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood

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