Variant report

Variant	rs1041290
Chromosome Location	chr9:71054560-71054561
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10868817	0.98[ASN][1000 genomes]
rs10868826	0.95[ASN][1000 genomes]
rs10868851	0.95[EUR][1000 genomes]
rs11142391	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142393	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11142449	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142461	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11142468	0.95[EUR][1000 genomes]
rs11142500	0.81[ASN][1000 genomes]
rs11142616	0.81[ASN][1000 genomes]
rs12238439	0.81[ASN][1000 genomes]
rs17056009	0.90[EUR][1000 genomes]
rs59478866	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7019238	0.89[ASN][1000 genomes]
rs72714318	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7875408	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71045600-71061400	Weak transcription	NHLF	lung
2	chr9:71051200-71062000	Weak transcription	Left Ventricle	heart
3	chr9:71051200-71091800	Weak transcription	Psoas Muscle	Psoas
4	chr9:71051600-71066600	Weak transcription	Right Ventricle	heart
5	chr9:71053000-71058200	Weak transcription	Fetal Stomach	stomach
6	chr9:71053000-71058200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:71053000-71061400	Weak transcription	Fetal Heart	heart
8	chr9:71053600-71056400	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:71053800-71055000	Weak transcription	Aorta	Aorta
10	chr9:71053800-71058200	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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