Variant report

Variant	rs10414056
Chromosome Location	chr19:42896714-42896715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:42896044..42900001-chr19:42903212..42907316,4	MCF-7	breast:
2	chr19:42895668..42898012-chr19:42901990..42905454,3	K562	blood:
3	chr19:42719757..42721985-chr19:42896236..42898850,2	K562	blood:

Variant related genes	Relation type
ENSG00000160570	Chromatin interaction
ENSG00000213904	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10401224	0.85[YRI][hapmap]
rs10403246	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs10406755	1.00[AMR][1000 genomes]
rs10408141	1.00[AMR][1000 genomes]
rs10408258	0.81[AFR][1000 genomes]
rs10409428	0.85[YRI][hapmap]
rs10409433	0.85[YRI][hapmap]
rs10410129	0.85[YRI][hapmap]
rs10410653	0.85[YRI][hapmap]
rs10411498	0.81[AFR][1000 genomes]
rs10412954	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10413484	0.85[YRI][hapmap]
rs10414620	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs10415478	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10416241	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10418493	1.00[AMR][1000 genomes]
rs10419013	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10421026	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10421409	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs10425003	0.81[AFR][1000 genomes]
rs10425883	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs10426284	0.81[AFR][1000 genomes]
rs11880356	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs13343322	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs13343719	0.81[AFR][1000 genomes]
rs13343761	1.00[ASW][hapmap];0.81[AFR][1000 genomes]
rs13345986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28393692	1.00[AMR][1000 genomes]
rs28483598	0.81[AFR][1000 genomes]
rs28532592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28572784	1.00[ASW][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs28675764	0.81[AFR][1000 genomes]
rs35620536	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59870753	0.81[AFR][1000 genomes]
rs6509012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7257090	1.00[AMR][1000 genomes]
rs7258727	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs73552850	1.00[AMR][1000 genomes]
rs8099885	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs8109258	0.85[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv911782	chr19:42514712-42931004	Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
5	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
6	nsv911785	chr19:42741124-42917545	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
7	nsv911788	chr19:42887492-42930652	Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42891800-42900800	Weak transcription	Right Atrium	heart
2	chr19:42892000-42900200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr19:42893400-42900600	Weak transcription	Spleen	Spleen
4	chr19:42895800-42899000	Weak transcription	A549	lung
5	chr19:42896200-42896800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:42896200-42897400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr19:42896200-42900800	Weak transcription	Esophagus	oesophagus
8	chr19:42896400-42899600	Weak transcription	Hela-S3	cervix

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