Variant report

Variant	rs10414620
Chromosome Location	chr19:42963260-42963261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10410653	0.85[YRI][hapmap]
rs10411498	0.86[YRI][hapmap]
rs10414056	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs10415478	0.92[YRI][hapmap]
rs10416241	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs10418312	0.80[YRI][hapmap]
rs10418988	0.80[YRI][hapmap]
rs10419013	0.82[AFR][1000 genomes]
rs10421026	0.88[AFR][1000 genomes]
rs13345986	0.85[AFR][1000 genomes]
rs28532592	0.85[AFR][1000 genomes]
rs28572784	0.92[YRI][hapmap];0.83[AFR][1000 genomes]
rs35620536	0.85[AFR][1000 genomes]
rs6509012	0.85[AFR][1000 genomes]
rs7258727	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42952400-42964400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:42955400-42964000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr19:42955400-42964600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr19:42955800-42966400	Weak transcription	GM12878-XiMat	blood
5	chr19:42957000-42966000	Weak transcription	Left Ventricle	heart
6	chr19:42957400-42964600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr19:42957400-42970600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr19:42960000-42964600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr19:42960000-42970200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:42960200-42963400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr19:42960200-42964600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr19:42960200-42970000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr19:42960200-42975600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:42960400-42965600	Weak transcription	Right Atrium	heart
15	chr19:42960400-42965800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr19:42960400-42965800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr19:42960400-42966000	Weak transcription	Esophagus	oesophagus
18	chr19:42960400-42971000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr19:42960400-42974200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr19:42960600-42965600	Weak transcription	HMEC	breast
21	chr19:42960600-42969800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr19:42961000-42966400	Weak transcription	Primary B cells from cord blood	blood
23	chr19:42961000-42970200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr19:42961600-42964000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr19:42961600-42966800	Weak transcription	Fetal Intestine Small	intestine
26	chr19:42961800-42964600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr19:42961800-42970000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr19:42961800-42970000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr19:42961800-42970200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:42961800-42970200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr19:42961800-42970200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr19:42962800-42964000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr19:42963200-42963400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr19:42963200-42964800	Strong transcription	Adipose Nuclei	Adipose
35	chr19:42963200-42967400	Enhancers	HepG2	liver

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