Variant report

Variant	rs10414709
Chromosome Location	chr19:42427949-42427950
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10411814	0.84[ASN][1000 genomes]
rs10419731	0.83[ASN][1000 genomes]
rs11665965	0.83[ASN][1000 genomes]
rs11667048	0.84[ASN][1000 genomes]
rs11668332	0.84[ASN][1000 genomes]
rs11669448	0.82[ASN][1000 genomes]
rs12971376	0.84[ASN][1000 genomes]
rs1864207	0.85[ASN][1000 genomes]
rs1965727	0.83[ASN][1000 genomes]
rs2081999	0.84[ASN][1000 genomes]
rs3745223	0.85[ASN][1000 genomes]
rs3826707	0.84[ASN][1000 genomes]
rs61007366	0.84[ASN][1000 genomes]
rs7253563	0.83[ASN][1000 genomes]
rs8109192	0.84[ASN][1000 genomes]
rs9749440	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv911777	chr19:42357455-42521108	Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv520239	chr19:42357455-42931004	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	esv1805469	chr19:42367635-42798851	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv911780	chr19:42398450-42521108	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv911781	chr19:42398450-42542999	Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42389200-42429200	Weak transcription	Right Atrium	heart
2	chr19:42421000-42431000	Weak transcription	Dnd41	blood
3	chr19:42424800-42429200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr19:42425200-42428200	Enhancers	Primary T cells from cord blood	blood
5	chr19:42425600-42432400	Weak transcription	Gastric	stomach
6	chr19:42425800-42428400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr19:42426200-42429000	Bivalent Enhancer	Primary B cells from cord blood	blood
8	chr19:42426600-42431600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr19:42426800-42431600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr19:42427800-42431200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr19:42427800-42431600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr19:42427800-42431600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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