Variant report

Variant	rs10414811
Chromosome Location	chr19:42206488-42206489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:42199364..42201968-chr19:42204770..42207753,2	K562	blood:
2	chr19:42201439..42203685-chr19:42204589..42206522,2	MCF-7	breast:
3	chr19:42206272..42207887-chr19:42208137..42210800,2	K562	blood:
4	chr19:42204838..42207532-chr19:42209650..42212423,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007306	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10153472	1.00[EUR][1000 genomes]
rs10401378	0.95[AFR][1000 genomes]
rs10411074	0.93[AFR][1000 genomes]
rs10419314	1.00[CEU][hapmap]
rs11083638	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11878734	1.00[CEU][hapmap]
rs11879437	1.00[CEU][hapmap]
rs11880977	1.00[CEU][hapmap]
rs11881220	1.00[EUR][1000 genomes]
rs11882356	1.00[EUR][1000 genomes]
rs11883018	1.00[CEU][hapmap]
rs12104228	1.00[CEU][hapmap]
rs55753848	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173718	1.00[EUR][1000 genomes]
rs58374389	1.00[EUR][1000 genomes]
rs717225	1.00[CEU][hapmap]
rs7253691	1.00[CEU][hapmap]
rs7257601	1.00[CEU][hapmap]
rs73932022	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932024	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932026	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73932031	1.00[EUR][1000 genomes]
rs73932034	1.00[EUR][1000 genomes]
rs73932035	1.00[EUR][1000 genomes]
rs73932037	1.00[EUR][1000 genomes]
rs73932045	1.00[EUR][1000 genomes]
rs73932082	1.00[EUR][1000 genomes]
rs73932086	1.00[EUR][1000 genomes]
rs8113686	1.00[CEU][hapmap]
rs9653098	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9989667	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3319146	chr19:42082639-42212929	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv3319147	chr19:42082742-42212770	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3422975	chr19:42106166-42212774	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv522854	chr19:42120283-42931004	Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
5	nsv1061309	chr19:42187716-42228445	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42203800-42210800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:42204800-42210800	Weak transcription	Esophagus	oesophagus
3	chr19:42205200-42210600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr19:42205400-42206600	Enhancers	Placenta	Placenta
5	chr19:42205600-42206800	Flanking Active TSS	A549	lung
6	chr19:42205600-42206800	Enhancers	Osteobl	bone
7	chr19:42205800-42206600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr19:42205800-42207200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr19:42206000-42206600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:42206000-42206600	Flanking Active TSS	Hela-S3	cervix
11	chr19:42206000-42210800	Weak transcription	Pancreas	Pancrea

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