Variant report

Variant	rs1041968
Chromosome Location	chr2:21232804-21232805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13392272	0.85[ASN][1000 genomes]
rs62122481	0.81[ASN][1000 genomes]
rs693	0.95[ASN][1000 genomes]
rs952275	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446962	chr2:21231647-21236245	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21222800-21234600	Weak transcription	Adipose Nuclei	Adipose
2	chr2:21223200-21245600	Strong transcription	Liver	Liver
3	chr2:21225600-21236400	ZNF genes & repeats	Fetal Intestine Small	intestine
4	chr2:21230400-21234000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:21230800-21235000	ZNF genes & repeats	Fetal Intestine Large	intestine
6	chr2:21232200-21235000	Genic enhancers	HepG2	liver
7	chr2:21232400-21233600	Weak transcription	Aorta	Aorta
8	chr2:21232400-21233800	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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