Variant report

Variant	rs10420150
Chromosome Location	chr11:93738081-93738082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10401640	1.00[EUR][1000 genomes]
rs10402596	1.00[EUR][1000 genomes]
rs10402641	1.00[EUR][1000 genomes]
rs10402996	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10403917	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10405060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407027	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407064	1.00[EUR][1000 genomes]
rs10407391	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407493	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10407986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10408400	1.00[EUR][1000 genomes]
rs10409320	1.00[EUR][1000 genomes]
rs10409415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10411164	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10412319	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10414928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10417976	1.00[EUR][1000 genomes]
rs10418747	1.00[EUR][1000 genomes]
rs10422629	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10422702	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423326	1.00[EUR][1000 genomes]
rs10423379	1.00[EUR][1000 genomes]
rs10423908	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10424023	1.00[EUR][1000 genomes]
rs10425119	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11879250	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11880709	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11881268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12104420	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13347048	1.00[EUR][1000 genomes]
rs13347114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2107463	1.00[EUR][1000 genomes]
rs28374173	1.00[EUR][1000 genomes]
rs28374334	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28402730	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28463867	1.00[AMR][1000 genomes]
rs28546375	1.00[EUR][1000 genomes]
rs28673196	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28697869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28832085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56705946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59841198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60726102	1.00[EUR][1000 genomes]
rs61224275	1.00[EUR][1000 genomes]
rs61286815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547154	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547155	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73562334	0.87[AFR][1000 genomes]
rs9304611	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv555965	chr11:93713911-93747735	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93735800-93740600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:93736000-93740600	Weak transcription	HMEC	breast
3	chr11:93736000-93740600	Weak transcription	NHEK	skin
4	chr11:93736000-93740800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:93736000-93740800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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