Variant report

Variant	rs10420582
Chromosome Location	chr19:36609156-36609157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr19:36608954-36609234	GM12878	blood:	n/a	n/a
2	POLR2A	chr19:36609139-36609463	GM12878	blood:	n/a	n/a
3	BATF	chr19:36608938-36609264	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36498267..36501775-chr19:36606279..36609989,4	MCF-7	breast:
2	chr19:36608534..36610118-chr19:36630270..36632454,3	MCF-7	breast:

Variant related genes	Relation type
TBCB	TF binding region
POLR2I	TF binding region
ENSG00000181392	Chromatin interaction
ENSG00000126247	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10410489	0.84[AFR][1000 genomes]
rs28808111	0.94[AFR][1000 genomes]
rs9917031	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
3	esv1831737	chr19:36324324-36690874	Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv833815	chr19:36519803-36624936	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	esv2752541	chr19:36563057-36690874	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	esv3412110	chr19:36609001-36609429	Genic enhancers Strong transcription Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36607200-36612200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:36607200-36612200	Weak transcription	Aorta	Aorta
3	chr19:36607200-36618600	Weak transcription	Psoas Muscle	Psoas
4	chr19:36607400-36609200	Weak transcription	Fetal Intestine Small	intestine
5	chr19:36607400-36612800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:36607400-36612800	Weak transcription	HSMMtube	muscle
7	chr19:36607400-36613800	Weak transcription	HSMM	muscle
8	chr19:36607400-36617000	Strong transcription	Thymus	Thymus
9	chr19:36607400-36617200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr19:36607400-36618400	Weak transcription	Stomach Mucosa	stomach
11	chr19:36607400-36618600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr19:36607400-36618800	Weak transcription	Small Intestine	intestine
13	chr19:36607600-36609200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr19:36607600-36609200	Genic enhancers	Brain Hippocampus Middle	brain
15	chr19:36607600-36609600	Weak transcription	Right Ventricle	heart
16	chr19:36607600-36609800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr19:36607600-36610400	Strong transcription	Fetal Intestine Large	intestine
18	chr19:36607600-36610600	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr19:36607600-36610600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr19:36607600-36610800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr19:36607600-36611000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr19:36607600-36611000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr19:36607600-36611200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr19:36607600-36612000	Genic enhancers	Brain Inferior Temporal Lobe	brain
25	chr19:36607600-36612400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr19:36607600-36612400	Strong transcription	NHEK	skin
27	chr19:36607600-36614800	Weak transcription	HUVEC	blood vessel
28	chr19:36607600-36615400	Strong transcription	Fetal Lung	lung
29	chr19:36607600-36616000	Weak transcription	Fetal Kidney	kidney
30	chr19:36607600-36617000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr19:36607600-36617000	Strong transcription	Primary T cells from cord blood	blood
32	chr19:36607600-36617000	Strong transcription	Brain Germinal Matrix	brain
33	chr19:36607600-36617000	Strong transcription	Fetal Muscle Leg	muscle
34	chr19:36607600-36617000	Strong transcription	Osteobl	bone
35	chr19:36607600-36617200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr19:36607600-36617200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr19:36607600-36617200	Strong transcription	Placenta	Placenta
38	chr19:36607600-36618400	Weak transcription	K562	blood
39	chr19:36607800-36610200	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr19:36607800-36610800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:36607800-36617000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr19:36608000-36609200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr19:36608000-36609200	Weak transcription	Esophagus	oesophagus
44	chr19:36608000-36609200	Weak transcription	Lung	lung
45	chr19:36608000-36609200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr19:36608000-36609600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr19:36608000-36609600	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr19:36608000-36610000	Strong transcription	Brain Angular Gyrus	brain
49	chr19:36608000-36610200	Weak transcription	Colonic Mucosa	Colon
50	chr19:36608000-36610200	Genic enhancers	HepG2	liver

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