The 2.0 version of rSNPBase

Variant report

Variant rs10420773
Chromosome Location chr19:43023923-43023924
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:43002200-43025200 Weak transcription Primary hematopoietic stem cells blood
2 chr19:43003200-43030600 Weak transcription Duodenum Smooth Muscle Duodenum
3 chr19:43003400-43028400 Weak transcription Esophagus oesophagus
4 chr19:43003400-43029400 Weak transcription Small Intestine intestine
5 chr19:43006200-43029800 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr19:43010200-43024800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr19:43012200-43028200 Strong transcription Liver Liver
8 chr19:43013800-43032000 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr19:43014600-43024400 Weak transcription Fetal Stomach stomach
10 chr19:43015600-43030800 Weak transcription Left Ventricle heart
11 chr19:43015800-43025400 Weak transcription Primary hematopoietic stem cells short term culture blood
12 chr19:43016000-43032400 Weak transcription Brain Anterior Caudate brain
13 chr19:43016400-43025000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr19:43016600-43024200 Weak transcription Colonic Mucosa Colon
15 chr19:43016600-43024800 Weak transcription Adipose Nuclei Adipose
16 chr19:43016600-43029400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr19:43016600-43031800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
18 chr19:43017000-43025200 Weak transcription Primary T cells fromperipheralblood blood
19 chr19:43017200-43024200 Weak transcription Primary B cells from cord blood blood
20 chr19:43017400-43031400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr19:43017800-43025600 Weak transcription Primary B cells from peripheral blood blood
22 chr19:43018200-43030400 Weak transcription Rectal Smooth Muscle rectum
23 chr19:43018600-43027200 Strong transcription Breast Myoepithelial Primary Cells Breast
24 chr19:43019000-43029200 Weak transcription Stomach Mucosa stomach
25 chr19:43019400-43027000 Weak transcription Placenta Placenta
26 chr19:43020400-43030400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
27 chr19:43021600-43026200 Strong transcription Rectal Mucosa Donor 31 rectum
28 chr19:43021800-43027400 Strong transcription Fetal Intestine Large intestine
29 chr19:43022000-43026600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr19:43022000-43028200 Strong transcription Duodenum Mucosa Duodenum
31 chr19:43022000-43028400 Genic enhancers HepG2 liver
32 chr19:43022200-43028600 Strong transcription Fetal Intestine Small intestine
33 chr19:43023000-43025400 Strong transcription Primary T helper naive cells fromperipheralblood blood
34 chr19:43023000-43026200 Strong transcription Primary T helper cells fromperipheralblood blood
35 chr19:43023000-43026200 Strong transcription Primary T regulatory cells fromperipheralblood blood
36 chr19:43023000-43026400 Strong transcription Rectal Mucosa Donor 29 rectum
37 chr19:43023000-43027800 Strong transcription Sigmoid Colon Sigmoid Colon
38 chr19:43023200-43026200 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr19:43023200-43026400 Strong transcription Primary T cells from cord blood blood
40 chr19:43023200-43027600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
41 chr19:43023200-43032400 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr19:43023400-43025400 Weak transcription Gastric stomach
43 chr19:43023600-43024000 Strong transcription Primary neutrophils fromperipheralblood blood
44 chr19:43023600-43024000 Strong transcription Fetal Adrenal Gland Adrenal Gland
45 chr19:43023600-43024800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr19:43023600-43025200 Weak transcription Lung lung
47 chr19:43023600-43025600 Weak transcription GM12878-XiMat blood
48 chr19:43023600-43027200 Strong transcription Spleen Spleen
49 chr19:43023600-43029600 Weak transcription Pancreatic Islets Pancreatic Islet
50 chr19:43023600-43031600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015