Variant report

Variant	rs10422191
Chromosome Location	chr19:43001467-43001468
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10401178	1.00[CEU][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10401428	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10402853	0.85[AFR][1000 genomes]
rs10403065	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10404589	1.00[CEU][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10405037	1.00[EUR][1000 genomes]
rs10405152	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10405179	0.87[AFR][1000 genomes]
rs10405410	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10405891	0.81[AMR][1000 genomes]
rs10405942	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406227	0.87[AFR][1000 genomes]
rs10408822	0.84[AFR][1000 genomes]
rs10412074	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10412594	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10414396	0.87[AFR][1000 genomes]
rs10414969	0.81[AMR][1000 genomes]
rs10415284	1.00[EUR][1000 genomes]
rs10416108	1.00[CEU][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416915	0.81[AMR][1000 genomes]
rs10417560	0.81[AMR][1000 genomes]
rs10418090	0.87[AFR][1000 genomes]
rs10418997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10419543	1.00[EUR][1000 genomes]
rs10419561	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10420773	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10423227	0.87[AFR][1000 genomes]
rs10423370	1.00[EUR][1000 genomes]
rs10424206	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10425199	1.00[EUR][1000 genomes]
rs10425666	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10426304	1.00[EUR][1000 genomes]
rs11878991	1.00[CEU][hapmap]
rs11879033	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11880554	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11880876	1.00[EUR][1000 genomes]
rs11881583	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11882225	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11882291	0.87[AFR][1000 genomes]
rs11882701	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11883406	1.00[CEU][hapmap]
rs11883425	1.00[CEU][hapmap]
rs13343840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13345272	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13345659	0.81[AMR][1000 genomes]
rs13346522	1.00[EUR][1000 genomes]
rs16975743	0.81[AMR][1000 genomes]
rs16975750	0.81[AMR][1000 genomes]
rs16975787	0.82[AFR][1000 genomes]
rs16975799	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16975815	0.87[AFR][1000 genomes]
rs16975862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2051832	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2051833	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28403155	0.80[AFR][1000 genomes]
rs28425201	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28448880	0.81[AMR][1000 genomes]
rs28473486	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28588100	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28602626	1.00[EUR][1000 genomes]
rs28625452	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28635141	1.00[EUR][1000 genomes]
rs28660279	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35623577	0.81[AMR][1000 genomes]
rs41348545	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41381546	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41421250	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57018456	0.82[AFR][1000 genomes]
rs58050143	0.87[AFR][1000 genomes]
rs58162305	0.87[AFR][1000 genomes]
rs60747186	0.83[EUR][1000 genomes]
rs61388144	1.00[EUR][1000 genomes]
rs6509015	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6509019	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7246161	1.00[CEU][hapmap]
rs7246591	1.00[CEU][hapmap]
rs7247278	1.00[CEU][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7248439	0.81[AMR][1000 genomes]
rs7248907	0.82[AFR][1000 genomes]
rs7249304	0.87[AFR][1000 genomes]
rs7250501	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7252874	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7253634	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7255271	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7256226	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7256850	1.00[EUR][1000 genomes]
rs7258854	1.00[CEU][hapmap]
rs7259335	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73558492	1.00[EUR][1000 genomes]
rs73558498	1.00[EUR][1000 genomes]
rs73560408	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8101378	0.83[AFR][1000 genomes]
rs8104731	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8105525	1.00[CEU][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8106836	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8107720	0.87[AFR][1000 genomes]
rs8108992	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8109086	0.80[AFR][1000 genomes]
rs8110904	0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs8110922	0.83[AFR][1000 genomes]
rs8111171	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8112593	1.00[EUR][1000 genomes]
rs8112915	1.00[EUR][1000 genomes]
rs8113154	1.00[EUR][1000 genomes]
rs8113448	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9749434	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9916999	0.85[AFR][1000 genomes]
rs9917002	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526186	chr19:42676481-43203507	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	esv2422471	chr19:42733141-43669485	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
3	esv2422468	chr19:42991289-43669027	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:42981200-43002000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:42997000-43003800	Enhancers	Fetal Intestine Small	intestine
3	chr19:42998000-43004800	Enhancers	Fetal Intestine Large	intestine
4	chr19:42998200-43002000	Enhancers	Liver	Liver
5	chr19:42999600-43003400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr19:43000000-43001800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr19:43000000-43003000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr19:43000200-43001800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr19:43000200-43002000	Weak transcription	Spleen	Spleen
10	chr19:43000400-43003000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr19:43000400-43003000	Enhancers	Primary B cells from peripheral blood	blood
12	chr19:43000600-43001800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr19:43000600-43002000	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr19:43000600-43002600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr19:43000600-43003600	Enhancers	Fetal Kidney	kidney
16	chr19:43000600-43003800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:43000800-43001600	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr19:43000800-43001600	Enhancers	A549	lung
19	chr19:43000800-43002000	Enhancers	Duodenum Mucosa	Duodenum
20	chr19:43000800-43003000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr19:43000800-43003200	Enhancers	Primary B cells from cord blood	blood
22	chr19:43000800-43003400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr19:43000800-43003400	Enhancers	Small Intestine	intestine
24	chr19:43001000-43002000	Weak transcription	Placenta	Placenta
25	chr19:43001000-43002800	Enhancers	Adipose Nuclei	Adipose
26	chr19:43001000-43003200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr19:43001000-43003600	Enhancers	Brain Hippocampus Middle	brain
28	chr19:43001200-43001800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr19:43001200-43002000	Weak transcription	Left Ventricle	heart
30	chr19:43001200-43002000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr19:43001200-43002600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr19:43001200-43003800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr19:43001400-43002000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr19:43001400-43002200	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr19:43001400-43002600	Flanking Active TSS	GM12878-XiMat	blood
36	chr19:43001400-43002800	Enhancers	Fetal Lung	lung
37	chr19:43001400-43003000	Flanking Active TSS	HepG2	liver
38	chr19:43001400-43003200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr19:43001400-43003600	Enhancers	Brain Anterior Caudate	brain
40	chr19:43001400-43003600	Enhancers	Brain Cingulate Gyrus	brain
41	chr19:43001400-43003600	Enhancers	Stomach Mucosa	stomach

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