The 2.0 version of rSNPBase

Variant report

Variant rs10424402
Chromosome Location chr19:42864052-42864053
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:42830800-42867200 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr19:42830800-42867600 Weak transcription Fetal Kidney kidney
3 chr19:42830800-42879200 Weak transcription Small Intestine intestine
4 chr19:42830800-42884200 Weak transcription Primary T regulatory cells fromperipheralblood blood
5 chr19:42831000-42874400 Weak transcription HSMM muscle
6 chr19:42831400-42867400 Weak transcription Fetal Heart heart
7 chr19:42831400-42867400 Weak transcription NHEK skin
8 chr19:42831600-42882600 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr19:42831800-42873800 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr19:42831800-42874800 Weak transcription K562 blood
11 chr19:42833400-42867400 Weak transcription GM12878-XiMat blood
12 chr19:42835400-42867400 Strong transcription Fetal Stomach stomach
13 chr19:42839800-42866800 Strong transcription Fetal Adrenal Gland Adrenal Gland
14 chr19:42841000-42867600 Weak transcription Osteobl bone
15 chr19:42841400-42865000 Weak transcription iPS-18 Cell Line embryonic stem cell
16 chr19:42841600-42867800 Weak transcription HepG2 liver
17 chr19:42843400-42867800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr19:42844000-42867200 Strong transcription Fetal Muscle Trunk muscle
19 chr19:42844800-42877400 Weak transcription Stomach Mucosa stomach
20 chr19:42849800-42867400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr19:42852000-42868000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
22 chr19:42852000-42868600 Strong transcription Fetal Muscle Leg muscle
23 chr19:42852200-42867400 Strong transcription Skeletal Muscle Female skeletal muscle
24 chr19:42852200-42867800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr19:42852200-42867800 Strong transcription Right Ventricle heart
26 chr19:42852400-42867200 Weak transcription Monocytes-CD14+_RO01746 blood
27 chr19:42852400-42867800 Weak transcription Primary T cells from cord blood blood
28 chr19:42853000-42867400 Strong transcription Lung lung
29 chr19:42854200-42867400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr19:42855000-42867400 Strong transcription Primary hematopoietic stem cells short term culture blood
31 chr19:42855400-42868000 Strong transcription Left Ventricle heart
32 chr19:42856400-42869000 Strong transcription Rectal Mucosa Donor 29 rectum
33 chr19:42856800-42866400 Strong transcription Colon Smooth Muscle Colon
34 chr19:42857200-42867200 Strong transcription Breast Myoepithelial Primary Cells Breast
35 chr19:42857400-42869600 Strong transcription Brain Germinal Matrix brain
36 chr19:42857600-42870800 Strong transcription Fetal Brain Female brain
37 chr19:42857800-42868800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr19:42857800-42871000 Weak transcription Fetal Brain Male brain
39 chr19:42857800-42874000 Strong transcription Cortex derived primary cultured neurospheres brain
40 chr19:42858000-42864200 Strong transcription Brain Inferior Temporal Lobe brain
41 chr19:42858200-42872200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr19:42859000-42867200 Weak transcription HSMMtube muscle
43 chr19:42859000-42868000 Weak transcription Thymus Thymus
44 chr19:42859200-42866400 Weak transcription Muscle Satellite Cultured Cells --
45 chr19:42860400-42867800 Weak transcription NH-A brain
46 chr19:42860800-42864800 Weak transcription Rectal Smooth Muscle rectum
47 chr19:42861000-42865000 Weak transcription A549 lung
48 chr19:42861000-42865800 Weak transcription H9 Cell Line embryonic stem cell
49 chr19:42861000-42866200 Weak transcription Primary T helper naive cells fromperipheralblood blood
50 chr19:42861000-42868000 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015