Variant report

Variant	rs10424736
Chromosome Location	chr19:53239176-53239177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:46)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:46 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:53238884-53239189	HepG2	liver:	n/a	n/a
2	EGR1	chr19:53239128-53239377	K562	blood:	n/a	n/a
3	POLR2A	chr19:53238930-53239411	HUVEC	blood vessel:	n/a	n/a
4	JUND	chr19:53238911-53239396	H1-hESC	embryonic stem cell:	n/a	n/a
5	RAD21	chr19:53239013-53239319	H1-hESC	embryonic stem cell:	n/a	chr19:53239143-53239155
6	STAT3	chr19:53239042-53239320	MCF10A-Er-Src	breast:	n/a	chr19:53239164-53239184 chr19:53239168-53239179
7	POLR2A	chr19:53239039-53239337	HUVEC	blood vessel:	n/a	n/a
8	FOS	chr19:53239045-53239240	MCF10A-Er-Src	breast:	n/a	n/a
9	E2F4	chr19:53239116-53239355	MCF10A-Er-Src	breast:	n/a	n/a
10	MXI1	chr19:53239125-53239241	H1-hESC	embryonic stem cell:	n/a	n/a
11	JUND	chr19:53239084-53239319	H1-hESC	embryonic stem cell:	n/a	n/a
12	YY1	chr19:53239143-53239362	H1-hESC	embryonic stem cell:	n/a	n/a
13	CTCF	chr19:53239100-53239250	RPTEC	kidney:	n/a	n/a
14	CREB1	chr19:53238953-53239394	H1-hESC	embryonic stem cell:	n/a	n/a
15	FOS	chr19:53239066-53239345	MCF10A-Er-Src	breast:	n/a	n/a
16	CHD2	chr19:53239126-53239374	H1-hESC	embryonic stem cell:	n/a	n/a
17	JUN	chr19:53239113-53239252	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr19:53239169-53239201	H1-hESC	embryonic stem cell:	n/a	n/a
19	HEY1	chr19:53238773-53239220	HepG2	liver:	n/a	n/a
20	TEAD4	chr19:53238978-53239392	H1-hESC	embryonic stem cell:	n/a	n/a
21	POLR2A	chr19:53238659-53239528	H1-hESC	embryonic stem cell:	n/a	n/a
22	EGR1	chr19:53239063-53239360	K562	blood:	n/a	n/a
23	TEAD4	chr19:53238971-53239450	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr19:53238939-53239268	H1-hESC	embryonic stem cell:	n/a	n/a
25	RAD21	chr19:53239131-53239325	H1-hESC	embryonic stem cell:	n/a	chr19:53239143-53239155
26	SIN3A	chr19:53239125-53239228	H1-hESC	embryonic stem cell:	n/a	n/a
27	MYC	chr19:53239126-53239326	MCF10A-Er-Src	breast:	n/a	n/a
28	TAF1	chr19:53238935-53239357	H1-hESC	embryonic stem cell:	n/a	n/a
29	ZNF143	chr19:53238987-53239299	H1-hESC	embryonic stem cell:	n/a	n/a
30	RAD21	chr19:53239019-53239352	H1-hESC	embryonic stem cell:	n/a	chr19:53239143-53239155
31	SETDB1	chr19:53238745-53239222	U2OS	brain:	n/a	n/a
32	POLR2A	chr19:53239039-53239238	MCF10A-Er-Src	breast:	n/a	n/a
33	STAT3	chr19:53239036-53239365	MCF10A-Er-Src	breast:	n/a	chr19:53239164-53239184 chr19:53239168-53239179
34	TBP	chr19:53239054-53239401	H1-hESC	embryonic stem cell:	n/a	n/a
35	EGR1	chr19:53239113-53239407	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr19:53237833-53239360	HUVEC	blood vessel:	n/a	n/a
37	ATF2	chr19:53238937-53239428	H1-hESC	embryonic stem cell:	n/a	n/a
38	MYC	chr19:53239102-53239243	MCF10A-Er-Src	breast:	n/a	n/a
39	STAT3	chr19:53239041-53239336	MCF10A-Er-Src	breast:	n/a	chr19:53239164-53239184 chr19:53239168-53239179
40	ATF2	chr19:53239019-53239370	H1-hESC	embryonic stem cell:	n/a	n/a
41	EGR1	chr19:53238984-53239451	H1-hESC	embryonic stem cell:	n/a	chr19:53239055-53239062
42	POLR2A	chr19:53239006-53239340	H1-hESC	embryonic stem cell:	n/a	n/a
43	FOS	chr19:53239044-53239265	MCF10A-Er-Src	breast:	n/a	n/a
44	STAT3	chr19:53239042-53239319	MCF10A-Er-Src	breast:	n/a	chr19:53239164-53239184 chr19:53239168-53239179
45	SP1	chr19:53238915-53239361	H1-hESC	embryonic stem cell:	n/a	n/a
46	MAX	chr19:53238996-53239297	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53239146-53239196	MCF10A-Er-Src	breast:	n/a
2	chr19:53239146-53239196	HepG2	liver:	n/a
3	chr19:53239146-53239196	AG04449	skin:	fetal
4	chr19:53239146-53239196	NH-A	brain:	n/a
5	chr19:53239146-53239196	HRPEpiC	eye:	n/a
6	chr19:53239146-53239196	Jurkat	blood:	n/a
7	chr19:53239146-53239196	HCT-116	colon:	n/a
8	chr19:53239146-53239196	AG10803	skin:	n/a
9	chr19:53239146-53239196	PANC-1	pancreas:	n/a
10	chr19:53239146-53239196	H1-hESC	embryonic stem cell:	embryo
11	chr19:53239146-53239196	BJ	skin:	n/a
12	chr19:53239146-53239196	SK-N-MC	brain:	n/a
13	chr19:53239146-53239196	GM12891	blood:	n/a
14	chr19:53239146-53239196	HEEpiC	esophagus:	n/a
15	chr19:53239146-53239196	AoSMC	blood vessel:	n/a
16	chr19:53239146-53239196	IMR90	lung:	fetal
17	chr19:53239146-53239196	NHBE	bronchial:	n/a
18	chr19:53239146-53239196	K562	blood:	n/a
19	chr19:53239146-53239196	NHDF-neo	bronchial:	n/a
20	chr19:53239146-53239196	SKMC	muscle:	n/a
21	chr19:53239146-53239196	RPTEC	kidney:	n/a
22	chr19:53239146-53239196	Caco-2	colon:	n/a
23	chr19:53239146-53239196	PrEC	prostate:	n/a
24	chr19:53239146-53239196	GM12878	blood:	n/a
25	chr19:53239146-53239196	Hela-S3	cervix:	n/a
26	chr19:53239146-53239196	AG04450	lung:	fetal
27	chr19:53239146-53239196	GM06990	blood:	n/a
28	chr19:53239146-53239196	NT2-D1	testis:	n/a
29	chr19:53239146-53239196	HUVEC	blood vessel:	n/a
30	chr19:53239146-53239196	HPAEpiC	pulmonary alveolar:	n/a
31	chr19:53239146-53239196	HIPEpiC	eye:	n/a
32	chr19:53239146-53239196	HRE	kidney:	n/a
33	chr19:53239146-53239196	AG09319	gingival:	n/a
34	chr19:53239146-53239196	GM12892	blood:	n/a
35	chr19:53239146-53239196	LNCaP	prostate:	n/a
36	chr19:53239146-53239196	ProgFib	skin:	n/a
37	chr19:53239146-53239196	HAEpiC	amniotic membrane:	n/a
38	chr19:53239146-53239196	T-47D	breast:	n/a
39	chr19:53239146-53239196	ECC-1	luminal epithelium:	n/a
40	chr19:53239146-53239196	SK-N-SH	brain:	n/a
41	chr19:53239146-53239196	HNPCEpiC	eye:	n/a
42	chr19:53239146-53239196	HEK293	kidney:	embryo
43	chr19:53239146-53239196	SAEC	small airway:	n/a
44	chr19:53239146-53239196	GM19239	blood:	n/a
45	chr19:53239146-53239196	ovcar-3	ovarian:	n/a
46	chr19:53239146-53239196	Hepatocyte	liver:	n/a
47	chr19:53239146-53239196	AG09309	skin:	n/a
48	chr19:53239146-53239196	PFSK-1	brain:	n/a
49	chr19:53239146-53239196	BE2_C	brain:	n/a
50	chr19:53239146-53239196	HL-60	blood:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
2	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:

No data

Variant related genes	Relation type
ZNF611	TF binding region
ZNF611	CpG island
ENSG00000213020	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10405860	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10406850	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10408145	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10424385	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853855	0.82[AMR][1000 genomes]
rs11669056	0.80[AMR][1000 genomes]
rs11673293	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12978372	0.84[ASN][1000 genomes]
rs1971063	0.82[AMR][1000 genomes]
rs28785552	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34244888	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35108223	0.84[EUR][1000 genomes]
rs35471410	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35629385	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7247272	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7253672	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7254023	0.82[AMR][1000 genomes]
rs7257371	0.81[ASN][1000 genomes]
rs7259466	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8109149	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8112235	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8113078	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057296	chr19:52950339-53396986	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv833874	chr19:53058014-53257875	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv912305	chr19:53092465-53349850	Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv912306	chr19:53092465-53400760	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv912307	chr19:53092465-53433054	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv912308	chr19:53092465-53436337	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv912309	chr19:53092465-53440653	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv912310	chr19:53092465-53451291	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv912312	chr19:53103875-53296371	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv912313	chr19:53103875-53436337	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv912317	chr19:53105547-53440653	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1066762	chr19:53112568-53552217	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv912318	chr19:53118278-53451291	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	esv3489404	chr19:53121944-53391394	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
15	esv3489405	chr19:53121944-53391394	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
16	nsv432072	chr19:53144788-53554388	Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
17	esv3401212	chr19:53151131-53482063	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
18	nsv912319	chr19:53152923-53241107	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
19	nsv912320	chr19:53164172-53243026	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
20	nsv912321	chr19:53186836-53451291	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
21	nsv1058903	chr19:53193570-53489633	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
22	nsv1067280	chr19:53193570-53567287	Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
23	nsv544062	chr19:53193570-53567287	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
24	nsv580030	chr19:53194344-53547394	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
25	nsv1067557	chr19:53195426-53319092	Enhancers Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
26	nsv1057118	chr19:53195426-53480449	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
27	esv2599883	chr19:53199036-53262483	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
28	nsv1065345	chr19:53199614-53254617	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
29	esv3331661	chr19:53200023-53262312	Active TSS Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
30	esv7362	chr19:53204293-53265963	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
31	nsv1062976	chr19:53205373-53274297	Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
32	esv3388532	chr19:53206027-53266994	Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
33	nsv470152	chr19:53207182-53249348	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
34	nsv458745	chr19:53207182-53274396	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
35	nsv580031	chr19:53207182-53274396	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
36	nsv530807	chr19:53210488-53695881	Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
37	nsv833875	chr19:53211335-53391459	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
38	esv3363127	chr19:53212333-53273987	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
39	nsv1061338	chr19:53212361-53253763	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
40	nsv912322	chr19:53212361-53267506	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
41	nsv1063862	chr19:53213111-53254617	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
42	esv3350085	chr19:53213910-53275524	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
43	nsv1055617	chr19:53223123-53274297	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53237200-53239200	Active TSS	H9 Cell Line	embryonic stem cell
2	chr19:53237200-53239200	Active TSS	Fetal Kidney	kidney
3	chr19:53237200-53239400	Active TSS	HSMM	muscle
4	chr19:53237200-53239400	Active TSS	HSMMtube	muscle
5	chr19:53237400-53239200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:53237400-53239400	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr19:53237400-53239400	Active TSS	Right Atrium	heart
8	chr19:53237600-53239200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr19:53237600-53239800	Active TSS	Colonic Mucosa	Colon
10	chr19:53237800-53239800	Active TSS	Duodenum Mucosa	Duodenum
11	chr19:53238400-53239200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr19:53238400-53239200	Enhancers	Fetal Heart	heart
13	chr19:53238400-53239400	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr19:53238400-53239600	Enhancers	HUVEC	blood vessel
15	chr19:53238400-53239800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr19:53238400-53239800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr19:53238400-53240600	Weak transcription	Lung	lung
18	chr19:53238400-53244600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr19:53238600-53239200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr19:53238600-53239200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr19:53238600-53239200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr19:53238600-53239200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr19:53238600-53239200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr19:53238600-53239200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr19:53238600-53239200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr19:53238600-53239200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr19:53238600-53239200	Flanking Active TSS	Colon Smooth Muscle	Colon
28	chr19:53238600-53239200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
29	chr19:53238600-53239200	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr19:53238600-53239200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr19:53238600-53239400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr19:53238600-53239400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr19:53238600-53239400	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr19:53238600-53239400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:53238600-53239400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
36	chr19:53238600-53239400	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr19:53238600-53240800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr19:53238800-53239200	Enhancers	H1 Cell Line	embryonic stem cell
39	chr19:53238800-53239200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr19:53238800-53239200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
41	chr19:53238800-53239200	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr19:53238800-53239200	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr19:53238800-53239200	Enhancers	Brain Germinal Matrix	brain
44	chr19:53238800-53239200	Enhancers	Fetal Brain Female	brain
45	chr19:53238800-53239200	Enhancers	Placenta	Placenta
46	chr19:53238800-53239200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr19:53238800-53239200	ZNF genes & repeats	A549	lung
48	chr19:53238800-53239200	Enhancers	K562	blood
49	chr19:53238800-53239400	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr19:53238800-53239400	Enhancers	Cortex derived primary cultured neurospheres	brain

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