Variant report

Variant	rs1042613
Chromosome Location	chr11:59623433-59623434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12274522	0.80[EUR][1000 genomes]
rs503644	0.85[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs519221	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs537545	0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs557564	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs579248	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825935	chr11:59615227-59626656	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv442233	chr11:59615391-59626011	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1042613	OR9I1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59614600-59624800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:59618000-59624800	Weak transcription	Pancreas	Pancrea
3	chr11:59622200-59624600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:59622200-59625000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:59622400-59624600	Enhancers	Hela-S3	cervix
6	chr11:59622400-59624800	Enhancers	K562	blood
7	chr11:59623400-59624000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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